Os08g0313200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to (clone pCDH1) carbon monoxide dehydrogenase (cdhA).
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Os08g0313200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to (clone pCDH1) carbon monoxide dehydrogenase (cdhA).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.16 | 0.301 | 12.4 | -0.571 | 0.771 | 0.58 | -0.177 | 0.388 | -0.367 | 13.6 | 97 | 1136 | -- | -- |
| 41.34 | 0.299 | 12.4 | -0.598 | 0.773 | 0.588 | -0.246 | -- | -0.368 | 13.6 | 97.37 | 1143 | -- | -- |
| 41.27 | 0.299 | 12.4 | -0.567 | 0.771 | 0.577 | -- | 0.499 | -0.366 | 13.6 | 193.1 | 1132 | -- | -- |
| 41.58 | 0.3 | 12.4 | -0.613 | 0.774 | 0.611 | -- | -- | -0.376 | 13.6 | 113 | 1141 | -- | -- |
| 54.7 | 0.346 | 12.4 | -0.599 | -- | 0.826 | -- | -0.488 | -0.376 | -- | 193.1 | 1132 | -- | -- |
| 47.42 | 0.323 | 12.4 | -0.567 | 0.638 | -- | -0.314 | -- | -0.354 | 13.9 | -- | -- | -- | -- |
| 47.81 | 0.324 | 12.4 | -0.577 | 0.638 | -- | -- | -- | -0.356 | 13.9 | -- | -- | -- | -- |
| 54.91 | 0.345 | 12.4 | -0.592 | -- | 0.798 | -- | -- | -0.377 | -- | 236.6 | 8 | -- | -- |
| 51.44 | 0.334 | 12.4 | -- | 0.772 | 0.554 | -- | -- | -0.306 | 13.6 | 226 | 1141 | -- | -- |
| 72.39 | 0.398 | 12.4 | -0.603 | -- | -- | -- | -- | -0.371 | -- | -- | -- | -- | -- |
| 56.58 | 0.352 | 12.4 | -- | 0.648 | -- | -- | -- | -0.292 | 13.9 | -- | -- | -- | -- |
| 64.16 | 0.373 | 12.4 | -- | -- | 0.805 | -- | -- | -0.312 | -- | 254.3 | 8 | -- | -- |
| 81.99 | 0.423 | 12.4 | -- | -- | -- | -- | -- | -0.304 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.75 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 12 |
| 7 | 40.10 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 15 | 40.33 | temperature | 20 | 270 | > th | dose dependent | sin | 3 | NA |
| 20 | 40.36 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 26 | 40.48 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 34 | 40.57 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 36 | 40.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 10 |
| 39 | 40.59 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 41 | 40.60 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 15 |
| 64 | 40.72 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 70 | 40.75 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 79 | 40.79 | humidity | 80 | 1440 | > th | dose independent | sin | 21 | NA |
| 84 | 40.80 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 5 |
| 95 | 40.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 11 |
| 101 | 40.85 | humidity | 80 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 113 | 40.88 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 120 | 40.89 | humidity | 70 | 1440 | > th | dose independent | rect. | 12 | 21 |
| 129 | 40.90 | temperature | 10 | 270 | > th | dose dependent | sin | 3 | NA |
| 138 | 40.93 | humidity | 80 | 1440 | < th | dose independent | sin | 21 | NA |
| 142 | 40.93 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 7 |
| 154 | 40.95 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 11 |
| 173 | 40.99 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 17 |
| 217 | 41.06 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 15 |
| 219 | 41.06 | humidity | 70 | 1440 | > th | dose independent | rect. | 12 | 16 |
| 251 | 41.08 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 18 |
| 299 | 41.14 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 10 |
| 328 | 41.16 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 354 | 41.20 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 8 |
| 362 | 41.20 | humidity | 90 | 720 | > th | dose dependent | rect. | 8 | 18 |
| 392 | 41.23 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 404 | 41.24 | humidity | 90 | 720 | > th | dose dependent | rect. | 18 | 8 |
| 410 | 41.25 | humidity | 70 | 1440 | < th | dose independent | rect. | 13 | 5 |
| 431 | 41.27 | humidity | 70 | 1440 | > th | dose dependent | sin | 20 | NA |
| 432 | 41.27 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 455 | 41.30 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 459 | 41.30 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 514 | 41.34 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 536 | 41.36 | humidity | 70 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 618 | 41.42 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 21 |
| 640 | 41.45 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 22 |
| 672 | 41.46 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 748 | 41.52 | humidity | 80 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 760 | 41.53 | radiation | 20 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 780 | 41.54 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 805 | 41.56 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 15 |
| 884 | 41.60 | humidity | 80 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 885 | 41.60 | humidity | 80 | 1440 | > th | dose independent | rect. | 19 | 23 |
| 934 | 41.63 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |