Os08g0310300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os08g0310300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.24 | 0.461 | 9 | -2.07 | 1.14 | -1.08 | 1.15 | -2.16 | -0.505 | 4.72 | 24.8 | 10 | -- | -- |
| 103.08 | 0.476 | 9.04 | -2.37 | 1.15 | -0.882 | 0.6 | -- | -0.586 | 4.85 | 25.65 | 28 | -- | -- |
| 99 | 0.467 | 9.01 | -2.14 | 1.14 | -1.03 | -- | -1.71 | -0.522 | 4.76 | 24.8 | 10 | -- | -- |
| 103.9 | 0.478 | 9.05 | -2.38 | 1.15 | -0.892 | -- | -- | -0.591 | 4.79 | 25.6 | 6 | -- | -- |
| 162.93 | 0.598 | 9.01 | -2.05 | -- | -0.664 | -- | -1.51 | -0.421 | -- | 24.1 | 7 | -- | -- |
| 114.87 | 0.502 | 9 | -2.17 | 1.03 | -- | 0.668 | -- | -0.399 | 5.41 | -- | -- | -- | -- |
| 115.96 | 0.504 | 9 | -2.17 | 1.03 | -- | -- | -- | -0.403 | 5.36 | -- | -- | -- | -- |
| 166.83 | 0.602 | 9.03 | -2.24 | -- | -0.527 | -- | -- | -0.459 | -- | 24.1 | 2 | -- | -- |
| 157.54 | 0.585 | 8.91 | -- | 0.851 | 1.58 | -- | -- | 0.0244 | 6.76 | 19.74 | 47520 | -- | -- |
| 171.39 | 0.612 | 9.02 | -2.14 | -- | -- | -- | -- | -0.377 | -- | -- | -- | -- | -- |
| 240.21 | 0.725 | 8.95 | -- | 0.995 | -- | -- | -- | -0.161 | 5.44 | -- | -- | -- | -- |
| 201.86 | 0.662 | 8.89 | -- | -- | 1.62 | -- | -- | 0.177 | -- | 19.53 | 47520 | -- | -- |
| 291.76 | 0.797 | 8.96 | -- | -- | -- | -- | -- | -0.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 95.76 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 9 | 95.96 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 12 | 96.01 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 22 |
| 27 | 96.25 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 29 | 96.26 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 32 | 96.29 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 34 | 96.33 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 35 | 96.37 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 41 | 96.41 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 43 | 96.43 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 47 | 96.48 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 68 | 96.71 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 213 | 98.49 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 285 | 99.11 | temperature | 25 | 30 | < th | dose dependent | sin | 7 | NA |
| 333 | 99.57 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 334 | 99.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 342 | 99.66 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 346 | 99.70 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 364 | 99.85 | radiation | 40 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 387 | 100.02 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 4 |
| 400 | 100.15 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 20 |
| 406 | 100.18 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 9 |
| 407 | 100.19 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 9 |
| 412 | 100.24 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 421 | 100.31 | radiation | 1 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 434 | 100.35 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 20 |
| 435 | 100.37 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 2 |
| 443 | 100.43 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 8 |
| 446 | 100.44 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 11 |
| 460 | 100.49 | temperature | 25 | 720 | > th | dose independent | rect. | 14 | 10 |
| 538 | 100.71 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 590 | 100.86 | radiation | 30 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 591 | 100.86 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 20 |
| 603 | 100.90 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 608 | 100.91 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 639 | 101.01 | radiation | 30 | 1440 | < th | dose independent | rect. | 6 | 6 |
| 669 | 101.06 | radiation | 30 | 1440 | < th | dose independent | rect. | 21 | 15 |
| 678 | 101.08 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 21 |
| 687 | 101.12 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 693 | 101.13 | temperature | 10 | 30 | > th | dose dependent | sin | 8 | NA |
| 753 | 101.26 | radiation | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 762 | 101.29 | radiation | 20 | 90 | < th | dose dependent | rect. | 7 | 10 |
| 767 | 101.30 | temperature | 20 | 10 | > th | dose dependent | sin | 8 | NA |
| 800 | 101.36 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 815 | 101.41 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 857 | 101.46 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 907 | 101.53 | radiation | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 993 | 101.64 | radiation | 10 | 1440 | > th | dose dependent | sin | 7 | NA |