Os08g0307500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0307500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.53 | 0.403 | 10.7 | 0.882 | 1.25 | 0.748 | 0.278 | 0.0165 | -0.0246 | 17.7 | 20.08 | 123 | -- | -- |
| 73.53 | 0.399 | 10.7 | 0.882 | 1.25 | 0.748 | 0.283 | -- | -0.0249 | 17.7 | 20.08 | 122 | -- | -- |
| 73.73 | 0.4 | 10.7 | 0.885 | 1.25 | 0.751 | -- | 0.0662 | -0.0222 | 17.7 | 20.26 | 122 | -- | -- |
| 73.73 | 0.4 | 10.7 | 0.882 | 1.25 | 0.746 | -- | -- | -0.0233 | 17.7 | 20.07 | 122 | -- | -- |
| 85.52 | 0.431 | 10.6 | 0.911 | -- | 1.62 | -- | -0.1 | 0.0147 | -- | 1.17 | 563 | -- | -- |
| 89 | 0.442 | 10.7 | 0.981 | 1.53 | -- | 0.276 | -- | 0.043 | 16.4 | -- | -- | -- | -- |
| 89.21 | 0.442 | 10.7 | 0.983 | 1.54 | -- | -- | -- | 0.0445 | 16.4 | -- | -- | -- | -- |
| 85.21 | 0.43 | 10.7 | 0.907 | -- | 1.6 | -- | -- | -0.0308 | -- | 1.16 | 563 | -- | -- |
| 94.54 | 0.453 | 10.7 | -- | 1.22 | 0.744 | -- | -- | -0.0612 | 17.7 | 20.07 | 122 | -- | -- |
| 215.5 | 0.686 | 10.7 | 0.923 | -- | -- | -- | -- | 0.0039 | -- | -- | -- | -- | -- |
| 114.69 | 0.501 | 10.7 | -- | 1.52 | -- | -- | -- | -0.0651 | 16.5 | -- | -- | -- | -- |
| 104.63 | 0.476 | 10.7 | -- | -- | 1.64 | -- | -- | -0.125 | -- | 0.4802 | 575 | -- | -- |
| 237.98 | 0.72 | 10.7 | -- | -- | -- | -- | -- | -0.0985 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.78 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 2 | 59.08 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 37 | 62.58 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 46 | 63.09 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 16 |
| 72 | 63.94 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 76 | 64.11 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 85 | 64.37 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 101 | 64.87 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 183 | 66.47 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 208 | 66.85 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 281 | 67.77 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 314 | 67.97 | humidity | 80.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 337 | 68.20 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 12 |
| 343 | 68.27 | temperature | 30.0 | 90 | < th | dose dependent | sin | 1 | NA |
| 353 | 68.35 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 368 | 68.48 | temperature | 25.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 376 | 68.54 | radiation | 40.0 | 270 | < th | dose independent | rect. | 10 | 21 |
| 380 | 68.59 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 16 |
| 419 | 68.87 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 23 |
| 422 | 68.87 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 424 | 68.92 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 428 | 68.94 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 435 | 68.99 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 445 | 69.06 | radiation | 10.0 | 270 | > th | dose independent | rect. | 16 | 21 |
| 450 | 69.07 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 4 | 16 |
| 473 | 69.20 | temperature | 25.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 474 | 69.20 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 9 |
| 481 | 69.26 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 493 | 69.34 | radiation | 20.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 494 | 69.35 | radiation | 10.0 | 270 | > th | dose independent | sin | 5 | NA |
| 496 | 69.36 | temperature | 20.0 | 30 | > th | dose dependent | sin | 1 | NA |
| 511 | 69.42 | temperature | 10.0 | 30 | > th | dose dependent | sin | 1 | NA |
| 521 | 69.46 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 545 | 69.59 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 9 |
| 553 | 69.64 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 560 | 69.66 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 565 | 69.68 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 566 | 69.69 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 20 |
| 570 | 69.69 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 589 | 69.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 591 | 69.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 632 | 69.95 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 14 |
| 654 | 70.02 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 11 |
| 695 | 70.15 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 703 | 70.18 | radiation | 1.0 | 30 | > th | dose independent | rect. | 9 | 10 |
| 720 | 70.21 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 754 | 70.31 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 768 | 70.35 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 16 |
| 793 | 70.41 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 2 | 6 |
| 805 | 70.44 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 16 |
| 814 | 70.48 | humidity | 80.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 843 | 70.56 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 845 | 70.59 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 850 | 70.64 | radiation | 1.0 | 270 | < th | dose independent | sin | 2 | NA |
| 851 | 70.64 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 853 | 70.65 | radiation | 10.0 | 270 | > th | dose independent | rect. | 8 | 2 |
| 912 | 70.82 | radiation | 1.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 914 | 70.83 | radiation | 40.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 916 | 70.83 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 9 | 6 |
| 940 | 70.89 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 16 |
| 960 | 70.94 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 966 | 70.96 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 980 | 70.98 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 4 |