Os08g0307400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phosphatidylinositol 3-kinase, root isoform (EC 2.7.1.137) (PI3- kinase) (PtdIns-3-kinase) (PI3K) (SPI3K-5).
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Os08g0307400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phosphatidylinositol 3-kinase, root isoform (EC 2.7.1.137) (PI3- kinase) (PtdIns-3-kinase) (PI3K) (SPI3K-5).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.35 | 0.365 | 9.56 | -0.84 | 0.812 | 0.455 | 0.256 | 0.436 | 0.206 | 5.77 | 21.5 | 402 | -- | -- |
| 61.09 | 0.364 | 9.58 | -0.927 | 0.817 | 0.466 | 0.141 | -- | 0.167 | 5.7 | 21.3 | 408 | -- | -- |
| 60.37 | 0.362 | 9.56 | -0.786 | 0.795 | 0.417 | -- | 0.433 | 0.22 | 5.88 | 21.9 | 526 | -- | -- |
| 60.98 | 0.364 | 9.58 | -0.965 | 0.823 | 0.476 | -- | -- | 0.171 | 5.79 | 21.31 | 408 | -- | -- |
| 88.29 | 0.438 | 9.59 | -0.834 | -- | 0.47 | -- | 0.538 | 0.198 | -- | 21.95 | 1267 | -- | -- |
| 69.66 | 0.391 | 9.55 | -0.815 | 0.73 | -- | 0.0171 | -- | 0.304 | 5.81 | -- | -- | -- | -- |
| 69.66 | 0.391 | 9.55 | -0.814 | 0.73 | -- | -- | -- | 0.304 | 5.81 | -- | -- | -- | -- |
| 89.31 | 0.44 | 9.6 | -0.966 | -- | 0.472 | -- | -- | 0.168 | -- | 22.04 | 1330 | -- | -- |
| 83.89 | 0.427 | 9.55 | -- | 0.774 | 0.311 | -- | -- | 0.325 | 5.57 | 21.4 | 309 | -- | -- |
| 97.33 | 0.461 | 9.56 | -0.792 | -- | -- | -- | -- | 0.321 | -- | -- | -- | -- | -- |
| 87.14 | 0.437 | 9.53 | -- | 0.718 | -- | -- | -- | 0.394 | 5.86 | -- | -- | -- | -- |
| 109.47 | 0.489 | 9.53 | -- | -- | -0.215 | -- | -- | 0.444 | -- | 26.7 | 4942 | -- | -- |
| 113.87 | 0.498 | 9.54 | -- | -- | -- | -- | -- | 0.408 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.51 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 5 | 59.66 | wind | 3.0 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 17 | 59.90 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 30 | 60.07 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 47 | 60.24 | wind | 3.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 51 | 60.27 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 53 | 60.29 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 57 | 60.32 | wind | 3.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 59 | 60.33 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 67 | 60.39 | wind | 3.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 75 | 60.42 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 86 | 60.49 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 88 | 60.51 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 96 | 60.56 | wind | 3.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 105 | 60.63 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 109 | 60.63 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 113 | 60.66 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 116 | 60.66 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 4 |
| 118 | 60.67 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 122 | 60.69 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 126 | 60.69 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 127 | 60.69 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 128 | 60.69 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 5 |
| 132 | 60.70 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 134 | 60.71 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 5 |
| 136 | 60.73 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 3 |
| 149 | 60.76 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 152 | 60.78 | wind | 9.0 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 156 | 60.81 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 173 | 60.86 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 188 | 60.92 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 190 | 60.92 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 196 | 60.94 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 198 | 60.94 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 208 | 60.96 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 215 | 61.00 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 246 | 61.09 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 254 | 61.10 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 261 | 61.12 | wind | 9.0 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 268 | 61.13 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 270 | 61.13 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 21 | 21 |
| 273 | 61.14 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 278 | 61.15 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 281 | 61.15 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 323 | 61.23 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 338 | 61.26 | wind | 9.0 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 366 | 61.30 | wind | 3.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 378 | 61.32 | wind | 9.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 391 | 61.33 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 14 |
| 398 | 61.33 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 14 |
| 402 | 61.34 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 406 | 61.35 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 423 | 61.39 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 14 |
| 440 | 61.41 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 8 | 22 |
| 479 | 61.46 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 14 |
| 488 | 61.47 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 16 |
| 514 | 61.51 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 523 | 61.52 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 534 | 61.54 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 16 |
| 541 | 61.54 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 16 |
| 551 | 61.56 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 571 | 61.59 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 572 | 61.59 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 16 |
| 574 | 61.59 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 615 | 61.65 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 644 | 61.68 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 648 | 61.68 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 676 | 61.72 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 740 | 61.80 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 758 | 61.82 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 760 | 61.83 | wind | 1.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 809 | 61.88 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 814 | 61.89 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 8 | 19 |
| 852 | 61.94 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 863 | 61.94 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 20 |
| 901 | 61.98 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 958 | 62.04 | wind | 1.0 | 14400 | > th | dose dependent | sin | 8 | NA |
| 971 | 62.06 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 977 | 62.06 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |