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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0307300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.73 (0.0298) R2 : 0.6
β1 : -1.43 (0.111) R2dD : 0.157 R2D : 0.17
β2 : 1.07 (0.0817) R2dC : 0.166 R2C : 0.254
β3 : 2.01 (0.168) R2dE : 0.143 R2E : 0.287
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.281 (0.0637) R2dN8 : 0.0222 R2N8 : -0.00666
σ : 0.557
deviance : 143.2
__
_____
C
peak time of C : 4.61
E
wheather : radiation
threshold : 1.08
memory length : 288
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.93
open length of G : 14.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
142.05 0.56 5.73 -1.44 1.07 2.16 -0.731 0.621 -0.275 4.6 1.029 279 4.03 14.1
142.34 0.556 5.73 -1.43 1.07 2.09 -0.599 -- -0.277 4.55 1.076 280 4.02 14.1
143.43 0.558 5.73 -1.43 1.07 2.13 -- 0.539 -0.269 4.62 1.074 281 4.03 14.1
143.2 0.557 5.73 -1.43 1.07 2.01 -- -- -0.281 4.61 1.08 288 3.93 14.3
167.66 0.603 5.72 -1.42 -- 2.06 -- -0.188 -0.323 -- 0.498 312 2.47 15.8
184.65 0.637 5.72 -1.64 1.42 -- -0.292 -- -0.303 5.18 -- -- -- --
184.86 0.637 5.72 -1.64 1.42 -- -- -- -0.302 5.19 -- -- -- --
166.11 0.6 5.75 -1.42 -- 1.97 -- -- -0.277 -- 0.99 314 2.3 15.8
191.37 0.644 5.73 -- 0.984 2.76 -- -- -0.193 4.3 0.1694 299 3.88 14.4
290.15 0.796 5.74 -1.59 -- -- -- -- -0.266 -- -- -- -- --
256.01 0.748 5.68 -- 1.39 -- -- -- -0.119 5.23 -- -- -- --
212.4 0.679 5.72 -- -- 2.29 -- -- -0.11 -- 0.1758 385 2.67 15.7
357.1 0.882 5.7 -- -- -- -- -- -0.0892 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 142.63 radiation 1.0 270 < th dose dependent rect. 4 14
2 143.17 radiation 1.0 270 < th dose independent rect. 4 14
4 144.42 temperature 10.0 30 > th dose dependent rect. 9 19
15 148.31 radiation 1.0 270 > th dose independent sin 1 NA
16 148.62 radiation 1.0 270 < th dose independent sin 1 NA
19 148.99 humidity 50.0 90 > th dose dependent rect. 4 16
21 149.23 humidity 50.0 90 > th dose dependent rect. 4 13
27 149.48 radiation 1.0 270 < th dose dependent sin 1 NA
39 150.38 temperature 10.0 90 > th dose dependent rect. 6 22
72 152.89 radiation 40.0 30 < th dose independent rect. 4 18
107 153.79 humidity 50.0 270 > th dose dependent rect. 2 15
116 154.10 humidity 60.0 30 > th dose independent rect. 4 18
121 154.21 radiation 40.0 1440 < th dose dependent rect. 21 8
124 154.29 radiation 40.0 1440 < th dose dependent rect. 23 6
127 154.39 temperature 10.0 90 > th dose dependent rect. 21 7
141 154.67 humidity 60.0 30 > th dose independent rect. 4 16
142 154.68 temperature 25.0 90 < th dose independent rect. 4 19
144 154.77 temperature 25.0 270 < th dose independent rect. 11 21
147 154.81 radiation 40.0 90 < th dose dependent rect. 4 7
148 154.82 temperature 10.0 1440 > th dose independent rect. 5 5
151 154.82 atmosphere 995.0 1440 > th dose independent rect. 5 5
152 154.82 atmosphere 1015.0 1440 < th dose independent rect. 5 5
153 154.82 temperature 10.0 1440 > th dose independent rect. 10 19
167 155.07 humidity 80.0 90 > th dose independent rect. 4 15
187 155.36 temperature 30.0 90 < th dose dependent rect. 4 17
218 155.76 temperature 15.0 30 > th dose dependent rect. 11 17
229 155.88 radiation 40.0 10 < th dose dependent rect. 5 17
232 155.93 radiation 1.0 270 < th dose independent rect. 4 2
245 156.04 temperature 10.0 30 > th dose dependent rect. 22 16
249 156.12 radiation 40.0 90 < th dose dependent rect. 4 5
260 156.22 radiation 1.0 270 < th dose dependent rect. 4 2
282 156.41 wind 9.0 90 < th dose dependent rect. 9 19
292 156.48 wind 9.0 1440 < th dose independent rect. 5 5
303 156.58 radiation 1.0 270 > th dose independent rect. 17 22
305 156.60 radiation 40.0 270 < th dose dependent rect. 2 9
314 156.71 radiation 30.0 90 < th dose independent rect. 4 7
316 156.72 temperature 15.0 90 > th dose independent rect. 9 19
332 156.90 humidity 50.0 90 > th dose dependent rect. 4 5
334 156.91 precipitation 0.1 90 < th dose independent rect. 9 19
335 156.91 precipitation 0.1 90 < th dose dependent rect. 9 19
338 156.92 precipitation 0.1 270 < th dose independent rect. 6 21
341 156.92 precipitation 0.1 270 < th dose dependent rect. 6 21
349 156.99 radiation 30.0 90 < th dose independent rect. 4 5
351 157.00 precipitation 0.1 270 < th dose independent rect. 5 23
352 157.00 radiation 40.0 270 < th dose dependent rect. 2 7
355 157.00 precipitation 0.1 270 < th dose dependent rect. 5 23
357 157.03 humidity 60.0 90 > th dose independent rect. 4 13
365 157.09 humidity 90.0 10 < th dose dependent rect. 9 7
381 157.21 humidity 60.0 90 > th dose dependent rect. 4 7
396 157.34 radiation 1.0 270 > th dose independent rect. 6 10
407 157.43 radiation 40.0 90 < th dose dependent rect. 4 11
420 157.48 radiation 40.0 270 < th dose independent rect. 2 15
455 157.70 radiation 40.0 90 < th dose dependent rect. 4 9
456 157.70 temperature 10.0 270 > th dose dependent rect. 20 16
464 157.77 atmosphere 995.0 90 > th dose dependent rect. 4 16
465 157.78 temperature 30.0 90 < th dose independent rect. 4 5
470 157.82 wind 9.0 90 < th dose independent rect. 9 19
492 157.93 radiation 20.0 270 < th dose independent rect. 2 7
500 157.96 humidity 60.0 90 > th dose independent rect. 4 5
515 158.05 radiation 40.0 10 < th dose dependent rect. 5 15
519 158.07 wind 9.0 90 < th dose independent rect. 4 5
520 158.07 temperature 10.0 90 > th dose independent rect. 4 5
523 158.07 atmosphere 995.0 90 > th dose independent rect. 4 5
524 158.07 atmosphere 1015.0 90 < th dose independent rect. 4 5
529 158.08 humidity 80.0 270 > th dose independent rect. 2 17
530 158.10 temperature 15.0 270 > th dose independent rect. 6 21
532 158.12 atmosphere 1015.0 90 < th dose independent rect. 9 19
533 158.13 wind 7.0 270 < th dose independent rect. 3 3
535 158.14 temperature 30.0 90 < th dose dependent rect. 4 5
545 158.19 radiation 20.0 10 < th dose independent rect. 4 18
550 158.21 precipitation 0.1 90 < th dose independent rect. 4 5
551 158.21 precipitation 0.1 90 < th dose dependent rect. 4 5
553 158.22 wind 9.0 270 < th dose independent rect. 6 21
555 158.23 radiation 30.0 270 < th dose dependent rect. 3 3
561 158.25 temperature 10.0 270 > th dose independent rect. 3 3
563 158.25 temperature 30.0 270 < th dose independent rect. 3 3
564 158.25 humidity 50.0 270 > th dose independent rect. 3 3
567 158.25 atmosphere 995.0 270 > th dose independent rect. 3 3
568 158.25 atmosphere 1015.0 270 < th dose independent rect. 3 3
569 158.25 radiation 20.0 270 < th dose independent rect. 3 3
603 158.41 radiation 20.0 270 < th dose independent rect. 2 15
608 158.42 atmosphere 995.0 90 > th dose dependent rect. 4 5
650 158.62 wind 7.0 270 < th dose independent rect. 4 1
676 158.71 temperature 10.0 270 > th dose independent rect. 4 1
678 158.71 temperature 30.0 270 < th dose independent rect. 4 1
679 158.71 humidity 50.0 270 > th dose independent rect. 4 1
682 158.71 atmosphere 995.0 270 > th dose independent rect. 4 1
683 158.71 atmosphere 1010.0 270 < th dose independent rect. 4 1
685 158.71 radiation 20.0 270 < th dose independent rect. 4 1
689 158.71 temperature 10.0 270 > th dose independent rect. 5 23
694 158.74 radiation 40.0 270 < th dose dependent rect. 4 1
708 158.79 wind 1.0 30 > th dose independent rect. 4 5
715 158.81 temperature 30.0 90 < th dose dependent rect. 13 20
732 158.92 precipitation 0.1 270 < th dose independent rect. 3 3
734 158.92 precipitation 0.1 270 < th dose dependent rect. 3 3
744 158.96 temperature 10.0 1440 > th dose independent rect. 21 8
747 158.96 temperature 30.0 1440 < th dose independent rect. 21 8
751 158.96 humidity 50.0 1440 > th dose independent rect. 21 8
757 158.96 atmosphere 995.0 1440 > th dose independent rect. 21 8
758 158.96 radiation 20.0 1440 < th dose independent rect. 21 8
770 158.96 temperature 10.0 1440 > th dose independent rect. 5 16
774 159.00 temperature 10.0 1440 > th dose independent rect. 23 6
777 159.00 temperature 30.0 1440 < th dose independent rect. 23 6
781 159.00 humidity 50.0 1440 > th dose independent rect. 23 6
790 159.00 atmosphere 995.0 1440 > th dose independent rect. 23 6
791 159.00 radiation 20.0 1440 < th dose independent rect. 23 6
803 159.00 temperature 10.0 1440 > th dose independent rect. 5 18
837 159.11 atmosphere 995.0 270 > th dose dependent rect. 4 1
841 159.13 precipitation 0.1 270 < th dose independent rect. 4 1
843 159.13 precipitation 0.1 270 < th dose dependent rect. 4 1
855 159.16 humidity 90.0 30 < th dose dependent rect. 9 5
885 159.28 humidity 50.0 270 > th dose dependent rect. 3 3
894 159.31 temperature 30.0 270 < th dose dependent rect. 11 20
944 159.48 humidity 50.0 270 > th dose dependent rect. 4 1
948 159.50 temperature 30.0 270 < th dose dependent rect. 3 3
974 159.59 humidity 50.0 10 > th dose dependent sin 0 NA
990 159.65 atmosphere 1015.0 270 < th dose independent rect. 6 21