Os08g0307000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0307000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.43 | 0.371 | 9.16 | -0.405 | 0.566 | -2.1 | 0.9 | -1.27 | 0.045 | 1.41 | 24.34 | 23 | -- | -- |
| 64.37 | 0.377 | 9.19 | -0.583 | 0.559 | -1.95 | 0.496 | -- | 0.00187 | 1.42 | 24.48 | 25 | -- | -- |
| 64.38 | 0.377 | 9.16 | -0.499 | 0.54 | -2.18 | -- | -0.77 | 0.0707 | 1.32 | 23.32 | 18 | -- | -- |
| 65.28 | 0.379 | 9.18 | -0.586 | 0.528 | -2.07 | -- | -- | 0.0527 | 1.32 | 23.4 | 11 | -- | -- |
| 79.82 | 0.416 | 9.15 | -0.444 | -- | -1.86 | -- | -0.586 | 0.127 | -- | 23.26 | 59 | -- | -- |
| 120.35 | 0.514 | 9.1 | -0.13 | 0.206 | -- | 0.5 | -- | 0.35 | 1.67 | -- | -- | -- | -- |
| 121.31 | 0.516 | 9.1 | -0.147 | 0.209 | -- | -- | -- | 0.347 | 2.11 | -- | -- | -- | -- |
| 80.29 | 0.417 | 9.16 | -0.511 | -- | -1.78 | -- | -- | 0.11 | -- | 23.33 | 59 | -- | -- |
| 73.54 | 0.402 | 9.15 | -- | 0.484 | -1.84 | -- | -- | 0.145 | 1.31 | 23.4 | 10 | -- | -- |
| 123.92 | 0.52 | 9.1 | -0.138 | -- | -- | -- | -- | 0.352 | -- | -- | -- | -- | -- |
| 121.87 | 0.516 | 9.1 | -- | 0.206 | -- | -- | -- | 0.363 | 2.09 | -- | -- | -- | -- |
| 86.41 | 0.433 | 9.14 | -- | -- | -1.6 | -- | -- | 0.196 | -- | 23.09 | 10 | -- | -- |
| 124.43 | 0.521 | 9.1 | -- | -- | -- | -- | -- | 0.367 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.34 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 22 |
| 3 | 62.54 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 22 |
| 14 | 62.91 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 16 | 62.96 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 18 | 62.97 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 19 | 62.98 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 21 | 62.99 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 23 | 63.01 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 28 | 63.09 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 29 | 63.10 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 32 | 63.15 | temperature | 25 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 33 | 63.16 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 63 | 64.01 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 325 | 72.78 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 332 | 73.09 | temperature | 25 | 90 | < th | dose dependent | sin | 9 | NA |
| 390 | 74.22 | temperature | 25 | 270 | < th | dose dependent | sin | 13 | NA |
| 416 | 74.72 | temperature | 10 | 90 | > th | dose dependent | sin | 10 | NA |
| 475 | 75.48 | temperature | 25 | 720 | < th | dose dependent | sin | 19 | NA |
| 544 | 76.49 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 613 | 77.21 | temperature | 20 | 10 | < th | dose independent | rect. | 15 | 22 |
| 749 | 77.92 | temperature | 20 | 10 | < th | dose independent | rect. | 10 | 22 |
| 762 | 77.96 | temperature | 20 | 90 | < th | dose independent | rect. | 10 | 20 |
| 814 | 78.16 | temperature | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 831 | 78.26 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 844 | 78.31 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 23 |
| 849 | 78.32 | temperature | 20 | 10 | < th | dose independent | rect. | 19 | 23 |
| 850 | 78.33 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 853 | 78.34 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 869 | 78.37 | temperature | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 898 | 78.51 | temperature | 20 | 10 | < th | dose independent | rect. | 7 | 23 |
| 931 | 78.71 | temperature | 20 | 10 | < th | dose independent | rect. | 5 | 23 |