Os08g0306200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os08g0306200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.76 | 0.363 | 3.17 | -0.146 | 0.0551 | 9.4 | 0.0424 | -24.8 | -0.0464 | 11 | 49.67 | 12 | -- | -- |
| 62.64 | 0.369 | 3.1 | 0.0294 | 0.0445 | 0.239 | 0.0489 | -- | -0.0478 | 6.7 | 66.76 | 343 | -- | -- |
| 59.24 | 0.358 | 3.21 | -0.215 | 0.0701 | 13.2 | -- | -34.5 | -0.0265 | 12 | 49.24 | 11 | -- | -- |
| 62.24 | 0.367 | 3.1 | 0.0452 | 0.0671 | 0.248 | -- | -- | -0.0547 | 9.89 | 58.09 | 481 | -- | -- |
| 58.17 | 0.355 | 3.28 | -0.477 | -- | 24.2 | -- | -63 | -0.0406 | -- | 49 | 11 | -- | -- |
| 63.47 | 0.373 | 3.1 | 0.0791 | 0.0568 | -- | 0.0482 | -- | -0.0542 | 13.5 | -- | -- | -- | -- |
| 63.48 | 0.373 | 3.1 | 0.0806 | 0.0566 | -- | -- | -- | -0.054 | 13.2 | -- | -- | -- | -- |
| 62.43 | 0.368 | 3.1 | 0.0437 | -- | 0.332 | -- | -- | -0.0397 | -- | 56 | 446 | -- | -- |
| 62.15 | 0.367 | 3.09 | -- | 0.0751 | 0.373 | -- | -- | -0.0408 | 9.12 | 56.89 | 466 | -- | -- |
| 63.68 | 0.373 | 3.1 | 0.0784 | -- | -- | -- | -- | -0.0551 | -- | -- | -- | -- | -- |
| 63.65 | 0.373 | 3.1 | -- | 0.0553 | -- | -- | -- | -0.063 | 13.2 | -- | -- | -- | -- |
| 62.45 | 0.368 | 3.1 | -- | -- | 0.389 | -- | -- | -0.0426 | -- | 55 | 417 | -- | -- |
| 63.84 | 0.373 | 3.1 | -- | -- | -- | -- | -- | -0.0638 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.77 | radiation | 10 | 10 | > th | dose dependent | rect. | 17 | 14 |
| 2 | 54.94 | radiation | 10 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 15 | 56.53 | humidity | 70 | 30 | < th | dose independent | rect. | 19 | 1 |
| 38 | 56.90 | humidity | 70 | 30 | < th | dose dependent | rect. | 19 | 1 |
| 85 | 57.78 | radiation | 10 | 10 | > th | dose independent | rect. | 17 | 14 |
| 86 | 57.89 | radiation | 10 | 10 | > th | dose independent | rect. | 17 | 1 |
| 113 | 58.08 | temperature | 30 | 90 | > th | dose independent | rect. | 18 | 1 |
| 127 | 58.16 | temperature | 30 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 143 | 58.75 | humidity | 50 | 10 | < th | dose dependent | rect. | 17 | 19 |
| 147 | 59.00 | humidity | 50 | 10 | < th | dose dependent | rect. | 17 | 1 |
| 188 | 59.23 | humidity | 50 | 10 | < th | dose independent | rect. | 17 | 19 |
| 204 | 59.50 | humidity | 50 | 10 | < th | dose independent | rect. | 17 | 1 |
| 222 | 59.56 | humidity | 50 | 10 | < th | dose dependent | sin | 9 | NA |
| 250 | 59.67 | humidity | 50 | 30 | > th | dose independent | rect. | 23 | 23 |
| 368 | 60.21 | humidity | 50 | 10 | < th | dose independent | sin | 9 | NA |
| 372 | 60.23 | humidity | 50 | 10 | < th | dose dependent | no | NA | NA |
| 373 | 60.23 | humidity | 50 | 10 | < th | dose dependent | rect. | 11 | 7 |
| 607 | 60.43 | atmosphere | 1005 | 30 | < th | dose independent | rect. | 16 | 1 |
| 608 | 60.43 | humidity | 50 | 270 | < th | dose independent | rect. | 16 | 18 |
| 618 | 60.46 | humidity | 50 | 270 | < th | dose dependent | rect. | 16 | 18 |
| 647 | 60.52 | temperature | 30 | 30 | > th | dose independent | rect. | 16 | 1 |
| 727 | 60.60 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 1 |
| 728 | 60.60 | temperature | 30 | 10 | > th | dose dependent | rect. | 16 | 21 |
| 731 | 60.62 | temperature | 30 | 30 | > th | dose dependent | rect. | 16 | 1 |
| 734 | 60.65 | humidity | 50 | 270 | > th | dose independent | rect. | 20 | 23 |
| 754 | 60.66 | temperature | 30 | 30 | < th | dose independent | rect. | 23 | 23 |
| 999 | 60.80 | humidity | 50 | 10 | > th | dose independent | sin | 11 | NA |