Os08g0305300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os08g0305300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.19 | 0.24 | 12.4 | 0.302 | 0.319 | -0.295 | 1.03 | -1.16 | 0.0974 | 0.0106 | 0.5061 | 88 | -- | -- |
| 27.81 | 0.247 | 12.4 | 0.238 | 0.178 | -0.169 | -0.219 | -- | 0.098 | 23.2 | 0.5061 | 88 | -- | -- |
| 26.83 | 0.241 | 12.4 | 0.276 | 0.311 | -0.3 | -- | -0.246 | 0.0839 | 0.0143 | 0.3865 | 76 | -- | -- |
| 27.3 | 0.243 | 12.4 | 0.246 | 0.317 | -0.287 | -- | -- | 0.0855 | 24 | 0.3691 | 81 | -- | -- |
| 28.06 | 0.247 | 12.4 | 0.257 | -- | -0.0509 | -- | -0.348 | 0.103 | -- | 14.53 | 305 | -- | -- |
| 28 | 0.248 | 12.4 | 0.252 | 0.0432 | -- | 0.446 | -- | 0.101 | 15.5 | -- | -- | -- | -- |
| 28.62 | 0.251 | 12.4 | 0.26 | 0.0456 | -- | -- | -- | 0.104 | 15.6 | -- | -- | -- | -- |
| 28.3 | 0.248 | 12.4 | 0.247 | -- | -0.0641 | -- | -- | 0.0927 | -- | 0.009887 | 92 | -- | -- |
| 28.7 | 0.25 | 12.4 | -- | 0.344 | -0.318 | -- | -- | 0.059 | 0.0248 | 0.006113 | 73 | -- | -- |
| 28.73 | 0.25 | 12.4 | 0.258 | -- | -- | -- | -- | 0.103 | -- | -- | -- | -- | -- |
| 30.4 | 0.258 | 12.4 | -- | 0.0405 | -- | -- | -- | 0.0749 | 15.7 | -- | -- | -- | -- |
| 30.02 | 0.255 | 12.4 | -- | -- | -0.0574 | -- | -- | 0.0839 | -- | 0.06003 | 81 | -- | -- |
| 30.5 | 0.258 | 12.4 | -- | -- | -- | -- | -- | 0.074 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.20 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 4 |
| 6 | 24.38 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 23 | 24.70 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 9 |
| 25 | 24.71 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 7 |
| 47 | 24.81 | temperature | 20 | 30 | > th | dose dependent | rect. | 20 | 9 |
| 88 | 25.04 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 1 |
| 98 | 25.08 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 100 | 25.10 | temperature | 25 | 720 | < th | dose independent | sin | 16 | NA |
| 109 | 25.13 | temperature | 25 | 720 | > th | dose independent | sin | 16 | NA |
| 126 | 25.20 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 10 |
| 137 | 25.22 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 10 |
| 145 | 25.25 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 9 |
| 178 | 25.31 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 16 |
| 182 | 25.32 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 16 |
| 196 | 25.35 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 10 |
| 218 | 25.40 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 12 |
| 222 | 25.41 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 8 | 7 |
| 225 | 25.41 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 9 | 5 |
| 238 | 25.42 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 9 |
| 251 | 25.43 | temperature | 25 | 10 | > th | dose independent | rect. | 17 | 13 |
| 257 | 25.44 | atmosphere | 1005 | 30 | < th | dose independent | rect. | 9 | 5 |
| 262 | 25.44 | temperature | 25 | 90 | > th | dose dependent | rect. | 17 | 12 |
| 270 | 25.45 | temperature | 25 | 720 | > th | dose dependent | rect. | 3 | 5 |
| 302 | 25.49 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 20 |
| 316 | 25.50 | radiation | 1 | 720 | < th | dose dependent | sin | 17 | NA |
| 328 | 25.51 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 14 |
| 380 | 25.56 | radiation | 1 | 720 | < th | dose independent | sin | 17 | NA |
| 430 | 25.61 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 11 |
| 469 | 25.67 | radiation | 1 | 720 | < th | dose dependent | rect. | 12 | 8 |
| 548 | 25.75 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 629 | 25.82 | atmosphere | 1015 | 90 | < th | dose independent | rect. | 19 | 10 |
| 648 | 25.83 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 11 |
| 657 | 25.84 | radiation | 20 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 666 | 25.85 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 668 | 25.85 | temperature | 25 | 10 | > th | dose independent | rect. | 17 | 9 |
| 684 | 25.85 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 21 |
| 688 | 25.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 699 | 25.86 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 711 | 25.87 | temperature | 25 | 10 | > th | dose independent | rect. | 20 | 10 |
| 763 | 25.90 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 8 |
| 864 | 25.93 | wind | 5 | 720 | < th | dose independent | rect. | 17 | 2 |
| 866 | 25.93 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 3 |
| 897 | 25.94 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 5 |
| 955 | 25.95 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 4 |