Os08g0305000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os08g0305000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.97 | 0.27 | 8.32 | -0.00774 | 0.437 | -0.455 | -0.167 | -1.5 | -0.166 | 6.41 | 24.8 | 2816 | -- | -- |
| 34.78 | 0.275 | 8.33 | -0.388 | 0.479 | -0.395 | -0.0211 | -- | -0.185 | 6.23 | 28.5 | 5812 | -- | -- |
| 33.03 | 0.268 | 8.32 | -0.0161 | 0.437 | -0.457 | -- | -1.48 | -0.167 | 6.39 | 24.76 | 2828 | -- | -- |
| 34.64 | 0.274 | 8.35 | -0.366 | 0.486 | -0.393 | -- | -- | -0.211 | 6.03 | 28.8 | 5884 | -- | -- |
| 42.81 | 0.305 | 8.33 | -0.0205 | -- | -0.523 | -- | -1.5 | -0.175 | -- | 24.78 | 2814 | -- | -- |
| 42.31 | 0.305 | 8.34 | -0.252 | 0.485 | -- | -0.0646 | -- | -0.145 | 6.03 | -- | -- | -- | -- |
| 42.32 | 0.305 | 8.34 | -0.253 | 0.485 | -- | -- | -- | -0.144 | 6.02 | -- | -- | -- | -- |
| 45.88 | 0.315 | 8.35 | -0.382 | -- | -0.441 | -- | -- | -0.187 | -- | 28.65 | 5648 | -- | -- |
| 38.49 | 0.289 | 8.34 | -- | 0.463 | -0.341 | -- | -- | -0.165 | 6.06 | 28.71 | 5884 | -- | -- |
| 54.5 | 0.345 | 8.34 | -0.239 | -- | -- | -- | -- | -0.133 | -- | -- | -- | -- | -- |
| 44 | 0.31 | 8.33 | -- | 0.481 | -- | -- | -- | -0.116 | 6.05 | -- | -- | -- | -- |
| 49.59 | 0.328 | 8.35 | -- | -- | -0.371 | -- | -- | -0.149 | -- | 29 | 5680 | -- | -- |
| 56 | 0.349 | 8.34 | -- | -- | -- | -- | -- | -0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.24 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 2 | 32.28 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 7 | 32.39 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 16 | 32.45 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 34 | 32.53 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 39 | 32.54 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 47 | 32.56 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 84 | 32.62 | temperature | 15.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 98 | 32.64 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 110 | 32.65 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 112 | 32.65 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 16 | 13 |
| 118 | 32.65 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 136 | 32.66 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 147 | 32.66 | temperature | 25.0 | 43200 | < th | dose dependent | sin | 16 | NA |
| 149 | 32.66 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 192 | 32.67 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 1 | 4 |
| 210 | 32.67 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 17 | 12 |
| 221 | 32.68 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 21 | 8 |
| 313 | 32.70 | temperature | 20.0 | 43200 | > th | dose independent | sin | 14 | NA |
| 318 | 32.70 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 21 | 8 |
| 367 | 32.71 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 16 | 13 |
| 397 | 32.72 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 7 |
| 428 | 32.72 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 490 | 32.74 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 491 | 32.74 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 498 | 32.74 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 7 |
| 526 | 32.74 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 646 | 32.76 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 20 | 21 |
| 703 | 32.77 | temperature | 20.0 | 43200 | > th | dose independent | no | NA | NA |
| 704 | 32.77 | temperature | 20.0 | 43200 | < th | dose independent | sin | 12 | NA |
| 716 | 32.77 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 10 | 14 |
| 723 | 32.77 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 2 | 22 |
| 735 | 32.77 | temperature | 20.0 | 43200 | > th | dose dependent | sin | 12 | NA |
| 805 | 32.78 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 21 | 21 |
| 818 | 32.78 | temperature | 25.0 | 43200 | < th | dose dependent | no | NA | NA |
| 854 | 32.78 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 17 | 20 |
| 860 | 32.78 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 880 | 32.79 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 12 |
| 965 | 32.79 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 1 | 23 |
| 976 | 32.79 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 23 | 23 |
| 999 | 32.80 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 10 | 14 |