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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0302100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.22 (0.0398) R2 : 0.00483
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.125 (0.0837) R2dN8 : 0.00624 R2N8 : 0.00483
σ : 0.749
deviance : 257.43
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
241.38 0.73 3.32 -0.743 0.431 0.259 -0.117 -2.25 -0.13 20.8 25.56 1504 -- --
244.71 0.729 3.24 -0.194 0.418 0.311 -0.133 -- 0.0535 21.1 18.4 2351 -- --
241.42 0.724 3.32 -0.74 0.431 0.26 -- -2.25 -0.13 20.8 25.56 1504 -- --
243.94 0.727 3.25 -0.247 0.43 0.389 -- -- 0.05 21.1 18.2 5259 -- --
250.29 0.737 3.32 -0.793 -- 0.405 -- -2.19 -0.161 -- 25.2 2134 -- --
246.28 0.736 3.23 -0.0318 0.439 -- -0.17 -- 0.125 20.9 -- -- -- --
246.37 0.735 3.23 -0.026 0.44 -- -- -- 0.125 20.9 -- -- -- --
253.93 0.742 3.26 -0.299 -- 0.446 -- -- 0.00177 -- 19.3 19592 -- --
245 0.729 3.24 -- 0.438 0.274 -- -- 0.092 20.9 18.5 6615 -- --
257.41 0.75 3.22 -0.0261 -- -- -- -- 0.122 -- -- -- -- --
246.39 0.734 3.23 -- 0.44 -- -- -- 0.128 20.9 -- -- -- --
255.86 0.745 3.23 -- -- 0.27 -- -- 0.0838 -- 18.51 6579 -- --
257.43 0.749 3.22 -- -- -- -- -- 0.125 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 233.98 humidity 80.0 30 < th dose independent rect. 23 1
4 233.98 humidity 80.0 30 < th dose dependent rect. 23 1
12 234.71 humidity 80.0 30 < th dose independent rect. 23 8
20 236.33 temperature 20.0 30 < th dose independent rect. 4 17
30 236.86 wind 5.0 10 > th dose independent rect. 23 1
37 237.21 temperature 25.0 270 < th dose dependent rect. 16 1
39 237.57 temperature 25.0 270 < th dose independent rect. 16 1
40 237.60 humidity 80.0 30 < th dose dependent rect. 23 8
48 237.75 wind 9.0 30 > th dose dependent rect. 11 3
53 237.82 wind 5.0 10 > th dose dependent rect. 23 1
80 238.06 temperature 20.0 90 < th dose independent rect. 4 1
82 238.13 temperature 20.0 10 < th dose independent rect. 4 2
105 238.41 temperature 20.0 90 > th dose independent rect. 20 20
106 238.43 temperature 20.0 90 < th dose independent rect. 1 19
108 238.51 wind 9.0 30 > th dose independent rect. 11 3
118 238.79 temperature 25.0 30 < th dose dependent rect. 5 1
145 238.91 temperature 25.0 30 < th dose dependent rect. 5 16
148 238.93 temperature 20.0 90 > th dose independent rect. 23 17
158 239.05 temperature 25.0 90 < th dose dependent rect. 16 4
172 239.16 atmosphere 1005.0 90 < th dose dependent rect. 20 1
174 239.18 wind 1.0 1440 < th dose dependent rect. 14 1
217 239.27 atmosphere 1005.0 10 < th dose dependent rect. 16 15
218 239.28 atmosphere 1005.0 10 < th dose dependent rect. 18 13
249 239.47 temperature 20.0 90 < th dose independent rect. 1 5
258 239.56 temperature 15.0 1440 > th dose independent rect. 6 15
259 239.56 radiation 30.0 90 < th dose independent rect. 11 16
261 239.57 atmosphere 1010.0 10 < th dose dependent rect. 15 12
263 239.59 temperature 20.0 90 > th dose independent rect. 21 9
267 239.61 temperature 20.0 270 > th dose independent rect. 19 7
268 239.61 atmosphere 1010.0 90 < th dose dependent rect. 15 12
271 239.63 atmosphere 1005.0 10 < th dose dependent sin 12 NA
282 239.68 atmosphere 1005.0 10 < th dose dependent rect. 22 1
291 239.73 radiation 1.0 90 < th dose dependent rect. 5 14
296 239.76 temperature 20.0 270 > th dose independent rect. 21 4
298 239.77 temperature 20.0 10 < th dose independent sin 23 NA
300 239.77 atmosphere 1005.0 10 < th dose dependent rect. 20 3
301 239.78 temperature 20.0 30 < th dose independent rect. 19 1
305 239.78 temperature 20.0 10 < th dose dependent rect. 19 2
323 239.84 precipitation 0.1 720 > th dose independent rect. 15 1
326 239.84 precipitation 0.1 720 > th dose dependent rect. 15 1
328 239.84 radiation 40.0 14400 < th dose dependent rect. 21 8
329 239.85 temperature 25.0 1440 < th dose independent rect. 22 2
333 239.86 temperature 20.0 270 > th dose independent rect. 19 10
334 239.86 temperature 20.0 90 < th dose independent rect. 18 12
340 239.88 humidity 60.0 43200 > th dose independent rect. 20 1
349 239.90 humidity 60.0 43200 < th dose independent rect. 20 11
355 239.93 humidity 60.0 43200 > th dose independent rect. 20 11
363 239.96 temperature 20.0 10 < th dose independent rect. 2 19
373 239.98 precipitation 0.1 10 > th dose independent rect. 7 11
377 239.98 precipitation 0.1 10 > th dose dependent rect. 7 11
384 240.00 precipitation 0.1 90 > th dose independent rect. 17 1
386 240.00 precipitation 0.1 90 > th dose dependent rect. 17 1
387 240.01 wind 5.0 90 > th dose independent rect. 18 1
388 240.01 radiation 10.0 270 < th dose independent rect. 10 1
389 240.01 humidity 80.0 1440 > th dose independent rect. 1 2
417 240.04 wind 5.0 90 > th dose dependent rect. 18 1
419 240.05 atmosphere 1005.0 14400 > th dose independent rect. 18 1
425 240.06 atmosphere 1005.0 90 > th dose dependent rect. 14 9
426 240.06 temperature 25.0 720 > th dose dependent rect. 21 12
428 240.07 atmosphere 1005.0 1440 < th dose independent rect. 23 1
433 240.07 atmosphere 1005.0 10 < th dose dependent rect. 18 9
437 240.08 radiation 20.0 10 < th dose independent rect. 11 16
442 240.09 temperature 25.0 1440 < th dose independent sin 9 NA
460 240.12 humidity 80.0 720 < th dose independent rect. 1 1
464 240.12 humidity 80.0 720 < th dose dependent rect. 1 1
471 240.13 precipitation 0.1 10 > th dose independent rect. 17 1
483 240.13 humidity 80.0 720 < th dose independent rect. 24 4
503 240.13 temperature 25.0 1440 < th dose independent rect. 17 14
506 240.13 precipitation 0.1 10 > th dose dependent rect. 17 1
535 240.14 temperature 20.0 270 > th dose independent rect. 23 1
537 240.14 temperature 15.0 1440 > th dose independent rect. 18 3
539 240.14 wind 9.0 30 > th dose dependent sin 6 NA
545 240.15 temperature 25.0 1440 > th dose independent rect. 22 15
550 240.16 temperature 20.0 90 > th dose independent rect. 23 7
556 240.17 temperature 25.0 1440 < th dose independent rect. 22 13
574 240.19 atmosphere 1005.0 30 < th dose dependent rect. 21 6
578 240.20 temperature 25.0 1440 > th dose independent sin 9 NA
588 240.20 atmosphere 1005.0 10 < th dose dependent rect. 14 17
601 240.23 temperature 20.0 90 > th dose independent rect. 23 4
605 240.24 atmosphere 1005.0 1440 > th dose independent rect. 23 1
611 240.25 atmosphere 1005.0 14400 < th dose independent rect. 18 1
614 240.26 humidity 70.0 43200 > th dose independent rect. 22 1
621 240.27 humidity 70.0 30 > th dose independent rect. 16 4
625 240.27 temperature 20.0 90 > th dose independent rect. 23 14
640 240.29 temperature 20.0 90 > th dose independent sin 6 NA
641 240.29 humidity 80.0 1440 > th dose independent rect. 3 1
646 240.29 temperature 25.0 1440 < th dose independent rect. 22 11
647 240.29 temperature 25.0 1440 > th dose independent rect. 17 14
650 240.29 wind 1.0 720 < th dose dependent rect. 11 1
659 240.31 temperature 20.0 10 > th dose independent rect. 23 8
668 240.32 humidity 50.0 14400 > th dose independent rect. 18 3
672 240.32 humidity 60.0 43200 > th dose independent rect. 20 9
674 240.32 temperature 25.0 1440 < th dose independent rect. 20 12
679 240.32 wind 5.0 10 > th dose dependent rect. 18 3
680 240.32 radiation 10.0 270 < th dose dependent rect. 8 9
700 240.35 atmosphere 1005.0 14400 < th dose independent rect. 17 3
706 240.36 temperature 25.0 1440 > th dose independent rect. 22 2
714 240.36 temperature 20.0 10 < th dose dependent rect. 13 8
716 240.37 humidity 60.0 43200 < th dose independent rect. 20 1
736 240.38 humidity 70.0 43200 < th dose dependent rect. 20 11
754 240.41 humidity 90.0 10 > th dose independent rect. 17 1
767 240.41 humidity 90.0 10 > th dose dependent rect. 17 1
785 240.42 temperature 25.0 30 < th dose dependent rect. 5 6
790 240.43 wind 5.0 10 > th dose independent rect. 17 4
796 240.43 atmosphere 1005.0 270 > th dose dependent rect. 15 5
800 240.44 wind 1.0 720 < th dose independent rect. 11 1
819 240.45 temperature 20.0 30 < th dose independent rect. 13 8
860 240.46 temperature 25.0 1440 > th dose independent rect. 22 11
877 240.47 radiation 10.0 270 < th dose independent rect. 9 4
884 240.47 temperature 20.0 30 < th dose independent rect. 9 11
886 240.47 radiation 1.0 90 < th dose independent rect. 5 14
912 240.48 atmosphere 1005.0 1440 < th dose dependent rect. 1 1
944 240.51 radiation 20.0 4320 < th dose independent rect. 21 9
949 240.51 temperature 25.0 1440 > th dose dependent rect. 12 1
963 240.53 radiation 10.0 1440 < th dose dependent rect. 21 8
969 240.54 temperature 25.0 1440 > th dose independent rect. 20 12
992 240.55 temperature 25.0 720 > th dose dependent rect. 23 9
995 240.56 temperature 25.0 1440 < th dose independent rect. 17 10
999 240.56 radiation 10.0 270 < th dose dependent rect. 10 1