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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0302000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase 40 precursor (EC 1.11.1.7) (Atperox P40).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0171) R2 : 0.000415
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0156 (0.0359) R2dN8 : 0.000536 R2N8 : 0.000415
σ : 0.321
deviance : 47.44
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
45.46 0.317 3 -0.037 0.0756 -0.138 0.0778 0.402 0.0102 8.05 1010 277 -- --
46 0.316 3 -0.0573 0.0895 -0.147 0.0222 -- 0.00694 8.11 1010 276 -- --
45.48 0.314 3 -0.0359 0.076 -0.138 -- 0.393 0.00987 7.93 1010 276 -- --
45.99 0.316 3 -0.0588 0.0766 -0.158 -- -- 0.00503 7.97 1010 276 -- --
45.78 0.315 3 -0.0366 -- -0.151 -- 0.398 0.00687 -- 1010 276 -- --
46.72 0.32 3 -0.0795 0.0983 -- -0.0175 -- 0.00602 8.79 -- -- -- --
46.72 0.32 3 -0.0801 0.0984 -- -- -- 0.00601 8.78 -- -- -- --
46.31 0.317 3.01 -0.0588 -- -0.176 -- -- 0.00457 -- 1010 276 -- --
46.09 0.316 3 -- 0.0799 -0.163 -- -- 0.00932 7.96 1010 276 -- --
47.27 0.321 3.01 -0.08 -- -- -- -- 0.00677 -- -- -- -- --
46.89 0.32 3 -- 0.0982 -- -- -- 0.0149 8.84 -- -- -- --
46.4 0.317 3.01 -- -- -0.181 -- -- 0.0111 -- 1010 276 -- --
47.44 0.321 3.01 -- -- -- -- -- 0.0156 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.54 temperature 20.0 10 < th dose independent rect. 11 1
7 41.54 humidity 90.0 90 > th dose independent rect. 10 1
9 41.54 precipitation 0.1 90 > th dose independent rect. 10 1
24 41.54 temperature 20.0 10 < th dose dependent rect. 11 1
30 41.54 humidity 90.0 90 > th dose dependent rect. 10 1
32 41.54 precipitation 0.1 90 > th dose dependent rect. 10 1
70 42.25 wind 1.0 30 < th dose independent rect. 10 1
71 42.25 temperature 10.0 1440 > th dose independent rect. 11 1
75 42.25 atmosphere 995.0 1440 > th dose independent rect. 11 1
78 42.25 precipitation 0.1 1440 < th dose independent rect. 11 1
79 42.25 temperature 10.0 1440 > th dose independent rect. 12 23
82 42.25 wind 1.0 30 < th dose dependent rect. 10 1
83 42.25 precipitation 0.1 1440 < th dose dependent rect. 11 1
85 42.38 temperature 25.0 30 > th dose dependent rect. 10 1
86 42.39 humidity 70.0 30 < th dose independent rect. 10 1
92 42.54 humidity 80.0 30 < th dose dependent rect. 10 1
94 42.55 temperature 25.0 30 > th dose independent rect. 10 1
103 42.77 radiation 20.0 30 > th dose independent rect. 10 1
106 42.81 atmosphere 1005.0 30 > th dose dependent rect. 10 1
107 42.82 atmosphere 1010.0 30 < th dose independent rect. 10 1
109 42.85 atmosphere 1005.0 30 > th dose independent rect. 10 1
114 42.94 radiation 1.0 30 > th dose dependent rect. 10 1
115 42.95 radiation 40.0 30 < th dose independent rect. 10 1
116 42.96 temperature 30.0 30 < th dose independent rect. 10 1
117 42.97 humidity 60.0 30 > th dose independent rect. 10 1
118 42.97 wind 7.0 30 < th dose dependent rect. 10 1
122 42.98 wind 5.0 30 < th dose independent rect. 10 1
126 42.99 temperature 10.0 30 > th dose independent rect. 10 1
133 42.99 precipitation 0.1 30 < th dose independent rect. 10 1
134 42.99 temperature 10.0 30 > th dose independent rect. 11 23
135 42.99 precipitation 0.1 30 < th dose dependent rect. 10 1
137 43.02 wind 1.0 30 > th dose independent rect. 10 1
143 43.37 wind 1.0 30 > th dose dependent rect. 10 1
144 43.37 atmosphere 1015.0 30 < th dose dependent rect. 10 1
146 43.42 radiation 40.0 30 < th dose dependent rect. 10 1
159 43.74 humidity 50.0 30 > th dose dependent rect. 10 1
183 44.33 wind 9.0 30 < th dose independent rect. 11 23
221 44.51 atmosphere 1005.0 30 > th dose dependent rect. 10 13
239 44.58 temperature 15.0 720 < th dose dependent rect. 24 1
241 44.59 temperature 15.0 720 < th dose independent rect. 1 1
298 44.79 atmosphere 1010.0 90 < th dose independent rect. 11 9
329 44.89 atmosphere 1010.0 270 < th dose independent rect. 3 14
331 44.90 atmosphere 1010.0 270 < th dose independent rect. 8 11
359 44.92 atmosphere 1000.0 30 > th dose independent rect. 11 23
374 44.93 temperature 20.0 30 > th dose dependent rect. 11 23
420 45.02 humidity 50.0 10 > th dose independent rect. 11 23
424 45.03 atmosphere 1010.0 270 < th dose independent sin 1 NA
435 45.04 precipitation 0.1 30 < th dose independent rect. 11 23
440 45.04 precipitation 0.1 30 < th dose dependent rect. 11 23
445 45.05 humidity 70.0 4320 > th dose independent rect. 21 7
457 45.07 temperature 15.0 720 > th dose independent sin 6 NA
463 45.08 atmosphere 1010.0 270 < th dose independent rect. 23 19
554 45.15 temperature 10.0 30 > th dose dependent rect. 11 23
571 45.18 atmosphere 1010.0 270 > th dose independent sin 23 NA
575 45.18 humidity 50.0 10 > th dose independent rect. 23 23
586 45.20 atmosphere 1010.0 90 > th dose independent sin 21 NA
597 45.21 atmosphere 1010.0 720 > th dose independent rect. 1 1
598 45.21 temperature 25.0 30 > th dose independent rect. 11 9
599 45.21 atmosphere 1000.0 10 > th dose independent rect. 23 23
603 45.22 humidity 50.0 4320 > th dose independent rect. 16 1
625 45.23 atmosphere 1005.0 30 > th dose dependent rect. 10 19
630 45.24 atmosphere 1000.0 90 > th dose independent rect. 23 10
631 45.24 radiation 10.0 1440 < th dose independent rect. 17 11
643 45.25 radiation 10.0 1440 < th dose independent rect. 17 2
662 45.26 radiation 10.0 1440 < th dose independent rect. 17 7
700 45.28 radiation 40.0 1440 < th dose independent rect. 15 13
722 45.30 temperature 15.0 720 < th dose independent sin 6 NA
731 45.30 radiation 10.0 1440 > th dose dependent rect. 17 1
754 45.31 temperature 15.0 720 < th dose dependent sin 4 NA
771 45.32 temperature 25.0 30 > th dose independent rect. 24 20
779 45.33 humidity 70.0 4320 > th dose independent rect. 21 1
812 45.35 humidity 70.0 4320 > th dose independent rect. 21 3
867 45.35 wind 9.0 4320 > th dose dependent rect. 14 1
881 45.36 radiation 40.0 1440 < th dose independent rect. 15 1
889 45.36 radiation 10.0 720 > th dose dependent rect. 6 1
904 45.36 temperature 20.0 30 > th dose dependent rect. 24 20
906 45.36 atmosphere 995.0 30 > th dose dependent rect. 10 22
912 45.37 radiation 40.0 1440 < th dose independent rect. 15 10
931 45.38 temperature 15.0 4320 > th dose independent rect. 1 1
933 45.38 temperature 15.0 4320 < th dose independent rect. 1 2