Os08g0301600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0301600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.83 | 0.404 | 11.4 | -0.476 | 0.849 | 0.961 | -0.416 | 0.552 | -0.268 | 21.5 | 21.47 | 890 | -- | -- |
| 73.33 | 0.399 | 11.4 | -0.543 | 0.873 | 0.874 | -0.263 | -- | -0.301 | 21.5 | 22.1 | 885 | -- | -- |
| 74.41 | 0.402 | 11.4 | -0.479 | 0.853 | 0.937 | -- | 0.449 | -0.261 | 21.5 | 21.4 | 888 | -- | -- |
| 73.44 | 0.399 | 11.4 | -0.545 | 0.851 | 0.868 | -- | -- | -0.314 | 21.5 | 22.04 | 854 | -- | -- |
| 113.31 | 0.496 | 11.4 | -0.539 | -- | 1.11 | -- | 0.285 | -0.366 | -- | 21.91 | 826 | -- | -- |
| 103.94 | 0.478 | 11.3 | -0.265 | 1.01 | -- | -0.268 | -- | -0.0367 | 21.7 | -- | -- | -- | -- |
| 104.21 | 0.478 | 11.3 | -0.254 | 1.01 | -- | -- | -- | -0.036 | 21.7 | -- | -- | -- | -- |
| 113.55 | 0.496 | 11.4 | -0.624 | -- | 1.1 | -- | -- | -0.391 | -- | 21.98 | 805 | -- | -- |
| 80.85 | 0.419 | 11.4 | -- | 0.874 | 0.752 | -- | -- | -0.23 | 21.5 | 22.2 | 801 | -- | -- |
| 165.21 | 0.601 | 11.3 | -0.245 | -- | -- | -- | -- | -0.0377 | -- | -- | -- | -- | -- |
| 105.91 | 0.481 | 11.3 | -- | 1.01 | -- | -- | -- | -0.00769 | 21.6 | -- | -- | -- | -- |
| 122.92 | 0.516 | 11.4 | -- | -- | 0.966 | -- | -- | -0.286 | -- | 22.05 | 797 | -- | -- |
| 166.8 | 0.603 | 11.3 | -- | -- | -- | -- | -- | -0.0105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 9 | 73.14 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 33 | 74.42 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 37 | 74.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 8 |
| 47 | 74.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 10 |
| 49 | 74.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 17 |
| 86 | 75.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 2 |
| 89 | 75.07 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 90 | 75.08 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 146 | 75.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 211 | 75.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 238 | 75.90 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 249 | 75.94 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 250 | 75.94 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 298 | 76.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 303 | 76.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 304 | 76.21 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 309 | 76.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 326 | 76.33 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 8 |
| 336 | 76.35 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 16 |
| 349 | 76.41 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 14 |
| 373 | 76.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 5 |
| 376 | 76.52 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 406 | 76.64 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 409 | 76.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 4 |
| 438 | 76.77 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 12 |
| 448 | 76.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 457 | 76.85 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 580 | 77.25 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 631 | 77.38 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 634 | 77.39 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 649 | 77.43 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 675 | 77.47 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 848 | 77.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 864 | 77.89 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |