Os08g0300700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os08g0300700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.01 | 0.332 | 8.57 | 0.0262 | 0.521 | 1.1 | -0.267 | 0.952 | 0.0959 | 18.9 | 21.4 | 2099 | -- | -- |
| 51.1 | 0.333 | 8.61 | -0.162 | 0.547 | 0.961 | -0.108 | -- | 0.0198 | 18.7 | 22.02 | 2329 | -- | -- |
| 50.18 | 0.33 | 8.57 | 0.0222 | 0.524 | 1.09 | -- | 0.908 | 0.0939 | 18.8 | 21.5 | 2157 | -- | -- |
| 51.12 | 0.333 | 8.61 | -0.166 | 0.548 | 0.962 | -- | -- | 0.0158 | 18.6 | 22.01 | 2339 | -- | -- |
| 64.31 | 0.374 | 8.56 | 0.0304 | -- | 1.13 | -- | 1.04 | 0.088 | -- | 21.4 | 2086 | -- | -- |
| 82.02 | 0.425 | 8.54 | 0.254 | 0.571 | -- | -0.104 | -- | 0.344 | 19.2 | -- | -- | -- | -- |
| 82.04 | 0.424 | 8.54 | 0.256 | 0.571 | -- | -- | -- | 0.344 | 19.2 | -- | -- | -- | -- |
| 66.1 | 0.379 | 8.6 | -0.153 | -- | 0.981 | -- | -- | 0.00836 | -- | 22 | 2167 | -- | -- |
| 51.62 | 0.335 | 8.6 | -- | 0.553 | 0.891 | -- | -- | 0.0329 | 18.6 | 22.31 | 2314 | -- | -- |
| 99.27 | 0.466 | 8.52 | 0.246 | -- | -- | -- | -- | 0.334 | -- | -- | -- | -- | -- |
| 83.77 | 0.428 | 8.54 | -- | 0.568 | -- | -- | -- | 0.316 | 19.2 | -- | -- | -- | -- |
| 66.78 | 0.381 | 8.59 | -- | -- | 0.931 | -- | -- | 0.0348 | -- | 22.1 | 2153 | -- | -- |
| 100.86 | 0.469 | 8.53 | -- | -- | -- | -- | -- | 0.307 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.43 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 2 | 50.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 13 | 51.03 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 17 | 51.19 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 21 | 51.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 43 | 51.34 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 12 |
| 76 | 51.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 92 | 51.49 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 107 | 51.52 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 108 | 51.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 8 |
| 141 | 51.57 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 151 | 51.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 190 | 51.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 282 | 51.75 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 5 |
| 454 | 51.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 554 | 52.07 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 584 | 52.11 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 4 |
| 615 | 52.15 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 805 | 52.35 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 875 | 52.43 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 925 | 52.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 960 | 52.53 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 962 | 52.53 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |