Os08g0298600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Male sterility C-terminal domain containing protein.
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Os08g0298600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Male sterility C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 236.89 | 0.723 | 3.26 | -0.613 | 0.146 | -1.31 | -0.208 | -33.2 | -0.0431 | 5.73 | 24.41 | 30 | 14 | 1.05 |
| 278.92 | 0.784 | 3.31 | -0.0868 | 0.145 | 1.62 | -0.00683 | -- | -0.047 | 5.71 | 25.57 | 3 | 14.5 | 0.556 |
| 237 | 0.723 | 3.26 | -0.613 | 0.144 | -1.32 | -- | -33.1 | -0.0416 | 5.72 | 24.47 | 30 | 14 | 1.05 |
| 278.92 | 0.783 | 3.31 | -0.0868 | 0.145 | 1.62 | -- | -- | -0.047 | 5.71 | 25.57 | 3 | 14.5 | 0.556 |
| 238.04 | 0.723 | 3.26 | -0.608 | -- | -1.38 | -- | -33.1 | -0.0332 | -- | 24.47 | 30 | 14 | 1.05 |
| 297.36 | 0.808 | 3.28 | -0.0765 | 0.0694 | -- | -0.142 | -- | 0.0815 | 10.7 | -- | -- | -- | -- |
| 297.42 | 0.808 | 3.28 | -0.0831 | 0.0752 | -- | -- | -- | 0.0805 | 9.45 | -- | -- | -- | -- |
| 279.97 | 0.783 | 3.31 | -0.0823 | -- | 1.55 | -- | -- | -0.0385 | -- | 25.32 | 5 | 14.5 | 0.949 |
| 279.12 | 0.782 | 3.31 | -- | 0.143 | 1.62 | -- | -- | -0.0372 | 5.73 | 25.46 | 3 | 14.6 | 0.721 |
| 297.75 | 0.806 | 3.29 | -0.0836 | -- | -- | -- | -- | 0.0807 | -- | -- | -- | -- | -- |
| 297.6 | 0.807 | 3.28 | -- | 0.0753 | -- | -- | -- | 0.0897 | 9.54 | -- | -- | -- | -- |
| 280.15 | 0.782 | 3.31 | -- | -- | 1.55 | -- | -- | -0.0294 | -- | 25.48 | 12 | 14.5 | 1 |
| 297.93 | 0.806 | 3.28 | -- | -- | -- | -- | -- | 0.09 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 236.89 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 6 | 236.89 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 9 | 237.22 | radiation | 30.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 10 | 237.53 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 11 | 237.55 | wind | 3.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 13 | 237.67 | temperature | 25.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 15 | 237.81 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 18 | 237.85 | wind | 1.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 19 | 237.86 | humidity | 70.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 24 | 238.07 | humidity | 60.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 25 | 238.08 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 26 | 238.16 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 29 | 238.20 | wind | 7.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 32 | 238.29 | radiation | 40.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 38 | 238.45 | temperature | 10.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 41 | 238.45 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 44 | 238.45 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 14 | 1 |
| 45 | 238.45 | temperature | 10.0 | 30 | > th | dose independent | rect. | 15 | 23 |
| 46 | 238.45 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 49 | 238.56 | temperature | 30.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 50 | 238.65 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 52 | 239.61 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 54 | 240.34 | wind | 9.0 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 55 | 240.66 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 159 | 253.83 | wind | 9.0 | 30 | < th | dose independent | rect. | 15 | 23 |
| 199 | 259.08 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 15 | 23 |
| 209 | 263.50 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 250 | 266.26 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 15 | 23 |
| 251 | 266.26 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 293 | 270.38 | radiation | 30.0 | 10 | > th | dose independent | sin | 13 | NA |
| 355 | 272.68 | humidity | 50.0 | 30 | > th | dose independent | rect. | 15 | 23 |
| 453 | 275.27 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 492 | 275.93 | temperature | 30.0 | 30 | < th | dose independent | rect. | 15 | 23 |
| 561 | 278.24 | radiation | 30.0 | 90 | > th | dose dependent | sin | 13 | NA |
| 595 | 278.89 | wind | 1.0 | 30 | > th | dose independent | rect. | 15 | 23 |
| 639 | 279.57 | radiation | 30.0 | 90 | < th | dose independent | sin | 13 | NA |
| 715 | 281.59 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 757 | 282.25 | radiation | 30.0 | 10 | < th | dose independent | sin | 13 | NA |
| 815 | 283.17 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 19 | 1 |
| 816 | 283.18 | humidity | 70.0 | 10 | < th | dose independent | rect. | 14 | 5 |
| 835 | 283.57 | humidity | 70.0 | 10 | < th | dose independent | rect. | 14 | 18 |
| 853 | 283.72 | radiation | 10.0 | 10 | > th | dose dependent | sin | 13 | NA |
| 861 | 283.84 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 15 | 23 |
| 939 | 284.93 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 15 | 23 |