Os08g0297500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0297500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.26 | 0.493 | 7.86 | -0.784 | 0.963 | -0.728 | 0.615 | 0.936 | -0.282 | 0.604 | 22.2 | 809 | -- | -- |
| 112.56 | 0.494 | 7.87 | -0.958 | 0.974 | -0.855 | 0.844 | -- | -0.289 | 0.497 | 21.7 | 834 | -- | -- |
| 111.72 | 0.492 | 7.85 | -0.741 | 0.965 | -0.731 | -- | 1.14 | -0.268 | 0.614 | 22.11 | 836 | -- | -- |
| 115.14 | 0.5 | 7.89 | -1.06 | 0.968 | -0.799 | -- | -- | -0.355 | 0.578 | 21.71 | 833 | -- | -- |
| 159.24 | 0.588 | 7.87 | -1.04 | -- | -0.655 | -- | 0.237 | -0.358 | -- | 22.06 | 281 | -- | -- |
| 135.94 | 0.547 | 7.94 | -1.32 | 0.849 | -- | 0.854 | -- | -0.593 | 0.93 | -- | -- | -- | -- |
| 139 | 0.552 | 7.94 | -1.35 | 0.848 | -- | -- | -- | -0.597 | 0.981 | -- | -- | -- | -- |
| 159.48 | 0.588 | 7.88 | -1.11 | -- | -0.654 | -- | -- | -0.376 | -- | 22.02 | 272 | -- | -- |
| 141.39 | 0.554 | 7.87 | -- | 1.08 | -1.08 | -- | -- | -0.194 | 0.707 | 21.5 | 1018 | -- | -- |
| 183.75 | 0.633 | 7.93 | -1.32 | -- | -- | -- | -- | -0.581 | -- | -- | -- | -- | -- |
| 187.09 | 0.64 | 7.91 | -- | 0.826 | -- | -- | -- | -0.447 | 0.911 | -- | -- | -- | -- |
| 173.1 | 0.613 | 7.84 | -- | -- | -1.28 | -- | -- | -0.189 | -- | 17.1 | 46526 | -- | -- |
| 229.64 | 0.707 | 7.89 | -- | -- | -- | -- | -- | -0.435 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.63 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 13 |
| 5 | 99.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 22 | 101.27 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 4 |
| 31 | 101.68 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 33 | 101.76 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 63 | 102.58 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 65 | 102.65 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 85 | 102.88 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 89 | 102.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 100 | 103.15 | temperature | 20 | 270 | > th | dose dependent | sin | 3 | NA |
| 134 | 103.58 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 155 | 103.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 228 | 104.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 303 | 105.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 342 | 106.18 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 440 | 107.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 13 |
| 454 | 107.49 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 6 |
| 459 | 107.54 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 590 | 108.58 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 663 | 109.10 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 717 | 109.49 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 811 | 110.09 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 13 |
| 825 | 110.16 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 830 | 110.21 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 11 |
| 885 | 110.44 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 946 | 110.73 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 972 | 110.86 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 16 |