Os08g0296600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os08g0296600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.5 | 0.268 | 8.4 | 1.22 | 0.551 | 1.04 | 0.941 | -0.427 | 0.0318 | 22.9 | 2.883 | 429 | -- | -- |
| 32.63 | 0.266 | 8.4 | 1.28 | 0.545 | 1.04 | 0.921 | -- | 0.0489 | 22.9 | 6.246 | 437 | -- | -- |
| 36.18 | 0.28 | 8.4 | 1.22 | 0.54 | 1.03 | -- | -0.149 | 0.0408 | 22.8 | 1.77 | 440 | -- | -- |
| 36.18 | 0.28 | 8.4 | 1.25 | 0.527 | 1.02 | -- | -- | 0.0475 | 22.8 | 2.627 | 465 | -- | -- |
| 48.04 | 0.323 | 8.39 | 1.19 | -- | 1.3 | -- | 0.229 | 0.0037 | -- | -6.094 | 688 | -- | -- |
| 44.61 | 0.313 | 8.37 | 1.51 | 0.692 | -- | 0.976 | -- | 0.2 | 21.5 | -- | -- | -- | -- |
| 48.07 | 0.325 | 8.37 | 1.48 | 0.691 | -- | -- | -- | 0.199 | 21.3 | -- | -- | -- | -- |
| 48.11 | 0.323 | 8.4 | 1.15 | -- | 1.34 | -- | -- | -0.00424 | -- | -2.902 | 682 | -- | -- |
| 72.72 | 0.397 | 8.44 | -- | 0.372 | 1.56 | -- | -- | -0.158 | 22.9 | 14.2 | 637 | -- | -- |
| 75.89 | 0.407 | 8.35 | 1.48 | -- | -- | -- | -- | 0.196 | -- | -- | -- | -- | -- |
| 105.51 | 0.48 | 8.41 | -- | 0.692 | -- | -- | -- | 0.0349 | 21.5 | -- | -- | -- | -- |
| 79.53 | 0.415 | 8.44 | -- | -- | 1.77 | -- | -- | -0.187 | -- | 5.945 | 724 | -- | -- |
| 133.63 | 0.54 | 8.39 | -- | -- | -- | -- | -- | 0.0323 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.84 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 8 | 31.96 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 22 |
| 9 | 31.97 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 33 | 32.25 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 35 | 32.28 | temperature | 10.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 51 | 32.44 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 4 | 7 |
| 55 | 32.47 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 106 | 32.79 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 114 | 32.84 | temperature | 30.0 | 720 | < th | dose dependent | sin | 9 | NA |
| 128 | 32.88 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 146 | 32.94 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 19 | 16 |
| 163 | 33.01 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 6 | NA |
| 224 | 33.18 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 18 | 19 |
| 231 | 33.20 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 17 |
| 306 | 33.35 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 4 | 2 |
| 390 | 33.44 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 20 | 21 |
| 413 | 33.47 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 489 | 33.56 | temperature | 10.0 | 270 | > th | dose dependent | no | NA | NA |
| 497 | 33.57 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 538 | 33.61 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 557 | 33.63 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 667 | 33.73 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 668 | 33.73 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 726 | 33.79 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 831 | 33.87 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 849 | 33.88 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 850 | 33.88 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 871 | 33.90 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 877 | 33.92 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 13 |
| 909 | 33.95 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 15 |
| 918 | 33.96 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 20 |
| 934 | 33.96 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 2 | 23 |
| 936 | 33.97 | temperature | 20.0 | 1440 | < th | dose independent | sin | 6 | NA |
| 978 | 34.00 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 983 | 34.00 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 996 | 34.01 | temperature | 20.0 | 1440 | > th | dose independent | sin | 6 | NA |