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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0294300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.037) R2 : 0.000459
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0356 (0.0778) R2dN8 : 0.000593 R2N8 : 0.000459
σ : 0.696
deviance : 222.35
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
198.59 0.662 2.94 0.266 0.217 -0.612 -0.118 -0.883 0.0704 9.46 1014 6262 -- --
201.86 0.662 2.92 0.473 0.214 -0.603 -0.185 -- 0.118 9.43 1014 5991 -- --
198.63 0.656 2.94 0.262 0.217 -0.612 -- -0.889 0.0709 9.65 1014 6261 -- --
201.95 0.662 2.91 0.475 0.217 -0.606 -- -- 0.122 9.64 1014 5990 -- --
201.43 0.661 2.94 0.257 -- -0.605 -- -0.891 0.0693 -- 1014 6261 -- --
216.9 0.69 2.94 0.328 0.211 -- -0.13 -- -0.000224 9.57 -- -- -- --
216.96 0.69 2.94 0.324 0.211 -- -- -- -0.000102 9.79 -- -- -- --
204.81 0.667 2.92 0.484 -- -0.596 -- -- 0.127 -- 1014 6141 -- --
206.51 0.669 2.93 -- 0.22 -0.59 -- -- 0.0593 9.67 1014 5067 -- --
219.62 0.692 2.95 0.322 -- -- -- -- 7.3e-05 -- -- -- -- --
219.72 0.693 2.95 -- 0.21 -- -- -- -0.0362 9.67 -- -- -- --
209.22 0.674 2.93 -- -- -0.595 -- -- 0.0558 -- 1014 5080 -- --
222.35 0.696 2.95 -- -- -- -- -- -0.0356 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 198.24 atmosphere 1015 4320 > th dose independent rect. 14 2
4 198.43 atmosphere 1015 4320 > th dose dependent rect. 13 4
8 198.51 atmosphere 1015 4320 < th dose independent rect. 14 2
11 198.54 atmosphere 1015 4320 > th dose dependent rect. 12 8
16 198.58 atmosphere 1015 4320 > th dose independent rect. 13 6
26 198.62 atmosphere 1015 4320 > th dose independent rect. 11 9
35 198.65 atmosphere 1015 4320 < th dose independent rect. 14 6
36 198.66 atmosphere 1015 4320 < th dose independent rect. 19 1
42 198.67 atmosphere 1015 4320 < th dose independent rect. 11 7
43 198.67 atmosphere 1015 4320 < th dose independent rect. 11 9
93 198.84 atmosphere 1015 4320 > th dose dependent rect. 11 1
219 199.27 radiation 10 4320 < th dose dependent rect. 12 2
230 199.32 atmosphere 1015 4320 < th dose independent sin 22 NA
234 199.32 atmosphere 1015 4320 < th dose independent rect. 4 10
237 199.33 atmosphere 1015 4320 > th dose independent rect. 4 10
245 199.37 atmosphere 1015 4320 > th dose independent sin 22 NA
253 199.38 atmosphere 1015 4320 > th dose dependent sin 21 NA
268 199.43 atmosphere 1015 4320 < th dose independent rect. 4 16
302 199.49 atmosphere 1015 4320 > th dose dependent rect. 4 8
379 199.68 atmosphere 1015 4320 > th dose dependent rect. 4 1
524 200.05 atmosphere 1015 4320 > th dose independent rect. 4 1
526 200.05 atmosphere 1015 4320 < th dose independent rect. 4 1
739 200.43 atmosphere 1015 4320 < th dose independent rect. 8 22
752 200.45 atmosphere 1015 4320 < th dose independent rect. 19 20
757 200.46 humidity 50 4320 > th dose independent rect. 13 1
775 200.48 humidity 50 4320 < th dose independent rect. 13 1
785 200.49 atmosphere 1015 4320 < th dose independent no NA NA
793 200.49 atmosphere 1015 4320 > th dose dependent no NA NA
806 200.50 atmosphere 1015 4320 > th dose dependent rect. 18 22
808 200.50 atmosphere 1015 4320 > th dose dependent rect. 15 23
871 200.55 humidity 50 4320 < th dose dependent rect. 14 2
884 200.57 atmosphere 1015 4320 > th dose independent rect. 21 17
908 200.60 atmosphere 1015 4320 > th dose independent rect. 8 22
950 200.66 atmosphere 1015 4320 > th dose independent no NA NA
985 200.70 humidity 50 4320 < th dose independent rect. 12 5