Os08g0293900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0293900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.41 | 0.306 | 12.1 | 0.572 | 0.352 | -0.616 | -0.457 | -1.66 | -0.0528 | 18.2 | 30.24 | 10 | -- | -- |
| 45.96 | 0.318 | 12.1 | 0.288 | 0.352 | -0.658 | -0.431 | -- | -0.134 | 18.7 | 30.24 | 10 | -- | -- |
| 42.77 | 0.307 | 12.1 | 0.576 | 0.367 | -0.554 | -- | -1.54 | -0.048 | 17.7 | 30.1 | 6 | -- | -- |
| 45.92 | 0.316 | 12.1 | 0.325 | 0.379 | -0.587 | -- | -- | -0.105 | 17.6 | 32.3 | 2 | -- | -- |
| 47.99 | 0.323 | 12.1 | 0.479 | -- | -0.932 | -- | -1.74 | -0.0826 | -- | 40.05 | 131 | -- | -- |
| 49.16 | 0.329 | 12.1 | 0.444 | 0.503 | -- | 0.631 | -- | -0.0136 | 16 | -- | -- | -- | -- |
| 50.03 | 0.331 | 12.1 | 0.451 | 0.517 | -- | -- | -- | -0.00994 | 16.5 | -- | -- | -- | -- |
| 50.19 | 0.33 | 12.1 | 0.235 | -- | -0.98 | -- | -- | -0.153 | -- | 67.73 | 197 | -- | -- |
| 48.45 | 0.326 | 12.1 | -- | 0.346 | -0.73 | -- | -- | -0.16 | 18 | 32.3 | 2 | -- | -- |
| 64.27 | 0.375 | 12.1 | 0.431 | -- | -- | -- | -- | -0.0235 | -- | -- | -- | -- | -- |
| 55.38 | 0.348 | 12.1 | -- | 0.508 | -- | -- | -- | -0.0601 | 16.6 | -- | -- | -- | -- |
| 51.55 | 0.334 | 12.1 | -- | -- | -1.06 | -- | -- | -0.188 | -- | 41.64 | 200 | -- | -- |
| 69.16 | 0.388 | 12.1 | -- | -- | -- | -- | -- | -0.0713 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.73 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 19 |
| 8 | 40.12 | temperature | 10 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 12 | 40.21 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 13 | 40.22 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 14 |
| 15 | 40.27 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 11 |
| 57 | 40.92 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 58 | 40.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 67 | 41.02 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 68 | 41.03 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 84 | 41.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 100 | 41.27 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 105 | 41.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 106 | 41.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 107 | 41.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 16 |
| 119 | 41.35 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 10 | 22 |
| 139 | 41.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 20 |
| 144 | 41.48 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 163 | 41.54 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 173 | 41.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 177 | 41.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 192 | 41.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 14 |
| 246 | 41.77 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 249 | 41.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 258 | 41.80 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 263 | 41.81 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 17 |
| 292 | 41.85 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 344 | 41.94 | temperature | 25 | 270 | > th | dose independent | rect. | 3 | 8 |
| 390 | 42.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 559 | 42.22 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 560 | 42.22 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 578 | 42.25 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 12 | 20 |
| 586 | 42.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 606 | 42.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 622 | 42.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 629 | 42.31 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 661 | 42.34 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 20 |
| 732 | 42.42 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 756 | 42.44 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 774 | 42.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 19 |
| 776 | 42.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 777 | 42.46 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 15 | 19 |
| 793 | 42.47 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 797 | 42.48 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 17 | 19 |
| 799 | 42.48 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 15 | 21 |
| 819 | 42.49 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 831 | 42.51 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 17 | 17 |
| 842 | 42.51 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 11 | 18 |
| 922 | 42.57 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 944 | 42.59 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 989 | 42.63 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 12 | 18 |