Os08g0293300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os08g0293300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 177.12 | 0.625 | 5.22 | 0.721 | 1.06 | 1.31 | -0.0378 | 0.95 | -0.353 | 9.65 | 22.1 | 1461 | -- | -- |
| 179.26 | 0.624 | 5.19 | 1.03 | 1.08 | 1.3 | -0.00872 | -- | -0.286 | 9.67 | 22.2 | 1480 | -- | -- |
| 177.08 | 0.62 | 5.22 | 0.72 | 1.06 | 1.31 | -- | 0.957 | -0.354 | 9.66 | 22.15 | 1494 | -- | -- |
| 179.23 | 0.624 | 5.19 | 1.03 | 1.06 | 1.3 | -- | -- | -0.28 | 9.67 | 22.14 | 1485 | -- | -- |
| 215.81 | 0.684 | 5.24 | 0.698 | -- | 1.42 | -- | 0.87 | -0.293 | -- | 22.3 | 826 | -- | -- |
| 239.98 | 0.726 | 5.29 | 0.555 | 1.06 | -- | -0.0966 | -- | -0.706 | 9.85 | -- | -- | -- | -- |
| 240.01 | 0.725 | 5.29 | 0.551 | 1.06 | -- | -- | -- | -0.706 | 9.84 | -- | -- | -- | -- |
| 216.57 | 0.685 | 5.21 | 0.998 | -- | 1.4 | -- | -- | -0.235 | -- | 22.29 | 801 | -- | -- |
| 203.77 | 0.665 | 5.25 | -- | 1.12 | 1.11 | -- | -- | -0.437 | 9.46 | 22.4 | 1396 | -- | -- |
| 307.73 | 0.82 | 5.32 | 0.54 | -- | -- | -- | -- | -0.706 | -- | -- | -- | -- | -- |
| 248.02 | 0.737 | 5.3 | -- | 1.06 | -- | -- | -- | -0.767 | 9.8 | -- | -- | -- | -- |
| 234.77 | 0.714 | 5.24 | -- | -- | 1.3 | -- | -- | -0.332 | -- | 24.9 | 792 | -- | -- |
| 315.42 | 0.829 | 5.33 | -- | -- | -- | -- | -- | -0.765 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 174.65 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 4 | 176.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 5 | 176.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 19 |
| 15 | 176.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 22 |
| 26 | 177.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 31 | 177.39 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 36 | 177.58 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 40 | 177.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 54 | 177.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 75 | 178.12 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 92 | 178.30 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 101 | 178.39 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 105 | 178.41 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 109 | 178.46 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 159 | 178.71 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 171 | 178.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 180 | 178.82 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 182 | 178.83 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 188 | 178.84 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 198 | 178.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 289 | 179.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 362 | 179.48 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 363 | 179.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 432 | 179.70 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 789 | 180.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 896 | 181.39 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |