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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0293200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.32 (0.0357) R2 : 0.547
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.51 (0.102) R2dC : 0.272 R2C : 0.421
β3 : -1.12 (0.119) R2dE : 0.11 R2E : 0.269
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.216 (0.0753) R2dN8 : 0.0107 R2N8 : 0.00971
σ : 0.669
deviance : 206.42
__
_____
C
peak time of C : 19.9
E
wheather : temperature
threshold : 29.04
memory length : 384
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
192.56 0.652 4.32 0.341 1.62 -1.22 1.56 2.67 0.297 19.7 29.57 363 -- --
192.76 0.647 4.3 0.588 1.6 -0.99 1.43 -- 0.31 19.7 29.3 384 -- --
198.95 0.657 4.31 0.396 1.59 -1.22 -- 1.68 0.317 19.7 29.6 369 -- --
198.23 0.656 4.3 0.57 1.56 -1.04 -- -- 0.304 19.7 29.3 387 -- --
271.33 0.767 4.31 0.314 -- -2.03 -- 0.0356 0.0852 -- 28.3 546 -- --
214.42 0.686 4.3 0.775 2 -- 1.88 -- 0.367 19.2 -- -- -- --
223.78 0.701 4.29 0.737 2.01 -- -- -- 0.372 19.1 -- -- -- --
271.33 0.767 4.3 0.319 -- -2.02 -- -- 0.0884 -- 28.29 546 -- --
206.42 0.669 4.32 -- 1.51 -1.12 -- -- 0.216 19.9 29.04 384 -- --
437.03 0.977 4.25 0.699 -- -- -- -- 0.336 -- -- -- -- --
238.08 0.722 4.31 -- 2 -- -- -- 0.29 19.2 -- -- -- --
273.94 0.771 4.31 -- -- -2.06 -- -- 0.0492 -- 28.22 551 -- --
449.92 0.99 4.27 -- -- -- -- -- 0.259 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 189.55 temperature 15.0 270 > th dose dependent rect. 10 9
7 190.66 temperature 30.0 270 < th dose independent rect. 5 20
12 191.02 radiation 40.0 270 < th dose dependent rect. 13 12
45 192.30 temperature 30.0 270 < th dose independent rect. 5 9
56 192.59 temperature 30.0 30 < th dose independent rect. 8 19
70 192.84 temperature 20.0 10 > th dose dependent rect. 12 9
72 192.86 radiation 20.0 270 < th dose independent rect. 13 12
102 193.31 temperature 30.0 720 > th dose independent rect. 11 1
104 193.33 temperature 25.0 10 > th dose independent rect. 12 9
113 193.55 temperature 30.0 270 < th dose independent rect. 17 23
116 193.59 temperature 25.0 90 > th dose independent rect. 13 7
127 193.74 temperature 25.0 270 > th dose independent rect. 11 8
147 193.98 radiation 40.0 270 < th dose independent rect. 6 19
156 194.02 temperature 25.0 270 > th dose dependent rect. 10 19
168 194.15 radiation 40.0 270 < th dose independent rect. 5 21
178 194.21 humidity 70.0 270 > th dose independent rect. 6 19
200 194.34 temperature 25.0 270 > th dose dependent sin 21 NA
250 194.78 temperature 30.0 270 > th dose independent rect. 11 4
274 194.98 radiation 40.0 270 < th dose dependent rect. 6 19
279 195.04 humidity 90.0 270 < th dose independent rect. 11 8
280 195.05 radiation 40.0 270 < th dose independent rect. 6 9
316 195.31 temperature 30.0 270 < th dose independent rect. 10 14
340 195.52 temperature 25.0 10 > th dose dependent rect. 12 18
346 195.57 temperature 25.0 30 > th dose dependent sin 17 NA
372 195.71 temperature 30.0 30 < th dose independent rect. 6 8
382 195.76 temperature 30.0 30 < th dose independent rect. 6 10
396 195.82 humidity 50.0 270 > th dose dependent rect. 6 19
404 195.86 radiation 1.0 270 > th dose dependent sin 16 NA
422 195.94 humidity 80.0 1440 < th dose dependent rect. 19 15
439 196.00 radiation 40.0 270 < th dose dependent sin 16 NA
448 196.05 temperature 25.0 90 < th dose independent rect. 2 7
451 196.06 humidity 90.0 90 > th dose independent rect. 3 5
477 196.16 humidity 50.0 10 > th dose dependent rect. 8 19
483 196.18 atmosphere 1015.0 30 < th dose independent rect. 6 21
499 196.28 humidity 70.0 270 > th dose independent rect. 13 12
522 196.43 temperature 15.0 720 > th dose dependent rect. 9 5
526 196.44 humidity 60.0 30 > th dose independent rect. 6 21
537 196.49 atmosphere 1010.0 10 < th dose independent rect. 3 5
542 196.51 temperature 25.0 720 > th dose dependent rect. 10 2
578 196.60 temperature 25.0 270 > th dose dependent rect. 2 17
626 196.77 atmosphere 1015.0 270 < th dose independent rect. 6 19
643 196.84 temperature 30.0 1440 < th dose independent rect. 11 1
653 196.88 atmosphere 995.0 30 > th dose independent rect. 6 21
707 197.00 temperature 30.0 270 > th dose independent sin 0 NA
721 197.06 precipitation 0.1 270 < th dose independent rect. 13 16
725 197.06 precipitation 0.1 270 < th dose dependent rect. 13 16
776 197.18 temperature 25.0 720 > th dose dependent rect. 4 10
789 197.22 radiation 1.0 270 < th dose dependent rect. 1 6
807 197.27 temperature 25.0 720 > th dose dependent rect. 21 17
813 197.29 atmosphere 1015.0 270 < th dose independent rect. 17 8
815 197.29 radiation 1.0 270 < th dose dependent sin 6 NA
829 197.33 radiation 1.0 270 < th dose dependent rect. 1 8
837 197.35 atmosphere 1015.0 90 < th dose independent rect. 19 8
839 197.35 temperature 30.0 270 > th dose independent rect. 17 22
843 197.36 radiation 10.0 270 > th dose independent sin 16 NA
851 197.38 humidity 60.0 10 > th dose independent rect. 8 19
854 197.39 radiation 1.0 270 < th dose independent rect. 1 6
860 197.41 precipitation 0.1 270 < th dose independent rect. 11 19
864 197.41 precipitation 0.1 270 < th dose dependent rect. 11 19
866 197.42 radiation 1.0 270 > th dose independent sin 18 NA
873 197.44 radiation 1.0 270 < th dose independent sin 18 NA
874 197.44 temperature 30.0 720 > th dose independent rect. 18 20
880 197.46 humidity 60.0 30 > th dose independent rect. 6 8
885 197.47 precipitation 0.1 30 < th dose independent rect. 3 3
886 197.47 precipitation 0.1 30 < th dose dependent rect. 3 3
948 197.59 radiation 40.0 720 < th dose independent rect. 6 12
950 197.59 atmosphere 1015.0 10 < th dose independent rect. 8 19
979 197.63 humidity 50.0 270 > th dose dependent rect. 16 9
983 197.64 radiation 1.0 270 > th dose independent rect. 11 18
988 197.66 radiation 1.0 270 > th dose independent rect. 11 8