Os08g0292400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0292400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, putative npRNA.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.54 | 0.469 | 5.92 | -0.542 | 1.63 | 0.763 | -0.568 | -0.00333 | -0.303 | 8.21 | 19.2 | 294 | -- | -- |
| 99.54 | 0.465 | 5.92 | -0.542 | 1.63 | 0.763 | -0.568 | -- | -0.303 | 8.21 | 19.21 | 293 | -- | -- |
| 100.52 | 0.467 | 5.92 | -0.558 | 1.63 | 0.737 | -- | -0.061 | -0.303 | 8.21 | 19.2 | 294 | -- | -- |
| 100.53 | 0.467 | 5.92 | -0.561 | 1.63 | 0.755 | -- | -- | -0.304 | 8.22 | 19.23 | 293 | -- | -- |
| 206.86 | 0.67 | 5.94 | -0.345 | -- | 0.899 | -- | -1.46 | -0.0634 | -- | 25.7 | 552 | -- | -- |
| 111.54 | 0.495 | 5.95 | -0.796 | 1.66 | -- | -0.511 | -- | -0.413 | 8.02 | -- | -- | -- | -- |
| 112.31 | 0.496 | 5.95 | -0.81 | 1.66 | -- | -- | -- | -0.412 | 8.04 | -- | -- | -- | -- |
| 203.97 | 0.665 | 5.9 | -0.476 | -- | 1.09 | -- | -- | 0.0199 | -- | 25.3 | 592 | -- | -- |
| 107.8 | 0.484 | 5.91 | -- | 1.61 | 0.961 | -- | -- | -0.22 | 8.27 | 19.2 | 319 | -- | -- |
| 263.91 | 0.759 | 5.99 | -0.794 | -- | -- | -- | -- | -0.391 | -- | -- | -- | -- | -- |
| 129.6 | 0.533 | 5.93 | -- | 1.66 | -- | -- | -- | -0.322 | 8.07 | -- | -- | -- | -- |
| 209.7 | 0.674 | 5.88 | -- | -- | 1.16 | -- | -- | 0.0966 | -- | 25.27 | 593 | -- | -- |
| 280.55 | 0.782 | 5.97 | -- | -- | -- | -- | -- | -0.303 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 97.24 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 10 |
| 3 | 97.36 | temperature | 20 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 6 | 97.50 | temperature | 20 | 270 | > th | dose independent | sin | 9 | NA |
| 9 | 97.52 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 12 |
| 11 | 97.55 | temperature | 20 | 270 | < th | dose independent | sin | 9 | NA |
| 44 | 98.51 | temperature | 20 | 10 | > th | dose independent | sin | 7 | NA |
| 57 | 98.78 | temperature | 20 | 10 | < th | dose independent | sin | 7 | NA |
| 97 | 99.31 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 10 |
| 121 | 99.54 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 17 |
| 129 | 99.60 | temperature | 25 | 90 | < th | dose dependent | sin | 8 | NA |
| 131 | 99.61 | temperature | 20 | 270 | < th | dose independent | rect. | 12 | 21 |
| 151 | 99.72 | temperature | 20 | 270 | < th | dose dependent | sin | 10 | NA |
| 163 | 99.79 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 2 |
| 182 | 99.89 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 13 |
| 185 | 99.90 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 14 |
| 231 | 100.10 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 14 |
| 244 | 100.15 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 23 |
| 249 | 100.17 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 3 |
| 257 | 100.20 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 23 |
| 279 | 100.30 | temperature | 20 | 720 | < th | dose independent | rect. | 16 | 9 |
| 364 | 100.50 | temperature | 20 | 270 | < th | dose dependent | rect. | 13 | 19 |
| 374 | 100.52 | temperature | 20 | 270 | < th | dose dependent | rect. | 16 | 16 |
| 444 | 100.73 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 501 | 100.86 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 518 | 100.90 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 23 |
| 528 | 100.95 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 23 |
| 530 | 100.96 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 18 |
| 570 | 101.09 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 16 |
| 573 | 101.10 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 18 |
| 621 | 101.18 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 11 |
| 640 | 101.22 | temperature | 20 | 720 | > th | dose independent | sin | 16 | NA |
| 645 | 101.22 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 22 |
| 647 | 101.23 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 23 |
| 664 | 101.26 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 16 |
| 666 | 101.26 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 17 |
| 680 | 101.29 | temperature | 20 | 720 | < th | dose independent | sin | 17 | NA |
| 694 | 101.30 | temperature | 15 | 270 | > th | dose dependent | sin | 10 | NA |
| 742 | 101.40 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 23 |
| 744 | 101.41 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 23 |
| 793 | 101.49 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 21 |
| 844 | 101.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 880 | 101.65 | temperature | 20 | 10 | > th | dose independent | rect. | 6 | 23 |
| 913 | 101.72 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 5 |