Os08g0290000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os08g0290000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.02 | 0.274 | 10.1 | -1.44 | 0.237 | -1.08 | 0.411 | -0.949 | -0.216 | 8.29 | 0.4488 | 1507 | -- | -- |
| 34.15 | 0.272 | 10.1 | -1.51 | 0.23 | -0.929 | 0.492 | -- | -0.238 | 8 | 0.6607 | 1543 | -- | -- |
| 34.22 | 0.272 | 10.1 | -1.43 | 0.225 | -1.06 | -- | -1 | -0.217 | 8.22 | 0.2449 | 1532 | -- | -- |
| 34.94 | 0.275 | 10.1 | -1.52 | 0.233 | -0.951 | -- | -- | -0.24 | 7.6 | 0.4481 | 1550 | -- | -- |
| 36.91 | 0.283 | 10.1 | -1.41 | -- | -1.15 | -- | -0.948 | -0.219 | -- | 0.3704 | 1535 | -- | -- |
| 41.92 | 0.304 | 10 | -1.34 | 0.358 | -- | 0.321 | -- | -0.116 | 9.87 | -- | -- | -- | -- |
| 42.3 | 0.305 | 10 | -1.33 | 0.355 | -- | -- | -- | -0.115 | 10.1 | -- | -- | -- | -- |
| 37.8 | 0.286 | 10.1 | -1.52 | -- | -1.01 | -- | -- | -0.235 | -- | 0.68 | 1543 | -- | -- |
| 84.7 | 0.429 | 10 | -- | 0.292 | -0.559 | -- | -- | -0.0326 | 7.67 | 8.21 | 1657 | -- | -- |
| 49.91 | 0.33 | 10.1 | -1.33 | -- | -- | -- | -- | -0.115 | -- | -- | -- | -- | -- |
| 88.6 | 0.44 | 10 | -- | 0.361 | -- | -- | -- | 0.033 | 10.3 | -- | -- | -- | -- |
| 88.23 | 0.439 | 10 | -- | -- | -0.272 | -- | -- | 0.032 | -- | 0.68 | 1543 | -- | -- |
| 96.57 | 0.459 | 10 | -- | -- | -- | -- | -- | 0.0326 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.54 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 3 | 33.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 20 |
| 8 | 34.14 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 21 |
| 9 | 34.19 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 12 | 34.30 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 22 |
| 17 | 34.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 22 |
| 24 | 34.44 | temperature | 15 | 30 | > th | dose dependent | rect. | 5 | 14 |
| 33 | 34.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 20 |
| 37 | 34.52 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 44 | 34.59 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 8 |
| 53 | 34.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 54 | 34.66 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 8 |
| 69 | 34.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 75 | 34.73 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 89 | 34.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 92 | 34.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 20 |
| 94 | 34.79 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 95 | 34.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 101 | 34.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 18 |
| 108 | 34.80 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 113 | 34.81 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 118 | 34.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 152 | 34.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 160 | 34.94 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 180 | 34.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 187 | 34.99 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 190 | 34.99 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 194 | 35.00 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 197 | 35.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 199 | 35.01 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 206 | 35.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 210 | 35.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 215 | 35.03 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 225 | 35.04 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 253 | 35.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 267 | 35.10 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 279 | 35.11 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 285 | 35.12 | radiation | 1 | 1440 | < th | dose dependent | sin | 19 | NA |
| 352 | 35.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 355 | 35.17 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 357 | 35.18 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 359 | 35.18 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 14 |
| 375 | 35.19 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 385 | 35.19 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 16 |
| 408 | 35.21 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 412 | 35.21 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 13 |
| 474 | 35.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 479 | 35.26 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 483 | 35.27 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 540 | 35.31 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 551 | 35.32 | temperature | 20 | 1440 | > th | dose dependent | sin | 21 | NA |
| 553 | 35.32 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 593 | 35.34 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 656 | 35.38 | temperature | 10 | 1440 | > th | dose dependent | sin | 23 | NA |
| 706 | 35.42 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 727 | 35.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 750 | 35.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 21 |
| 754 | 35.44 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 774 | 35.45 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 16 |
| 776 | 35.45 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 793 | 35.46 | temperature | 25 | 1440 | < th | dose independent | sin | 20 | NA |
| 795 | 35.46 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 821 | 35.47 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 883 | 35.50 | temperature | 25 | 1440 | > th | dose independent | sin | 20 | NA |
| 910 | 35.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 945 | 35.52 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 961 | 35.53 | radiation | 1 | 1440 | < th | dose independent | sin | 20 | NA |
| 971 | 35.53 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 18 |