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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0286500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.00849) R2 : 0.0366
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0744 (0.0179) R2dN8 : 0.0473 R2N8 : 0.0366
σ : 0.16
deviance : 11.73
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
10.44 0.152 2.79 1.2 0.0642 -15.4 0.161 94.7 -0.0634 10.3 994.9 673 -- --
11.21 0.157 2.98 0.067 0.0621 0.308 0.138 -- -0.0658 9.48 994.9 673 -- --
10.46 0.151 2.81 1.12 0.0657 -15.4 -- 94.7 -0.0652 9.89 994.7 667 -- --
11.04 0.155 2.98 0.0634 0.0626 0.233 -- -- -0.0627 9.36 997.4 820 -- --
10.68 0.152 2.81 1.1 -- -15.5 -- 94.9 -0.0641 -- 994.6 659 -- --
11.3 0.158 2.98 0.0688 0.0605 -- 0.139 -- -0.0665 9.71 -- -- -- --
11.37 0.158 2.98 0.0736 0.0621 -- -- -- -0.0666 8.96 -- -- -- --
11.27 0.156 2.98 0.0642 -- 0.231 -- -- -0.0621 -- 997.5 852 -- --
11.14 0.155 2.98 -- 0.0638 0.244 -- -- -0.0694 9.18 997.5 823 -- --
11.59 0.159 2.98 0.0736 -- -- -- -- -0.0662 -- -- -- -- --
11.51 0.159 2.98 -- 0.0622 -- -- -- -0.0748 8.88 -- -- -- --
11.38 0.157 2.98 -- -- 0.242 -- -- -0.0688 -- 997.6 873 -- --
11.73 0.16 2.98 -- -- -- -- -- -0.0744 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 9.84 temperature 25.0 90 > th dose independent rect. 1 1
2 9.93 temperature 25.0 90 > th dose dependent rect. 1 1
5 10.26 atmosphere 1000.0 90 < th dose independent rect. 24 2
6 10.26 atmosphere 1000.0 90 < th dose dependent rect. 24 1
7 10.26 atmosphere 1000.0 10 < th dose dependent rect. 24 2
11 10.27 atmosphere 1000.0 10 < th dose independent rect. 1 1
29 10.30 atmosphere 995.0 720 < th dose independent rect. 14 1
70 10.30 atmosphere 995.0 720 < th dose dependent rect. 14 1
111 10.33 temperature 25.0 10 > th dose independent rect. 1 1
115 10.33 temperature 25.0 10 > th dose dependent rect. 1 1
123 10.39 atmosphere 995.0 720 < th dose independent sin 6 NA
124 10.39 radiation 40.0 30 < th dose independent rect. 11 16
125 10.40 atmosphere 1010.0 10 < th dose dependent rect. 2 1
130 10.43 atmosphere 995.0 720 < th dose dependent sin 7 NA
179 10.53 humidity 50.0 30 > th dose dependent rect. 3 8
188 10.56 atmosphere 1000.0 30 > th dose independent rect. 12 23
190 10.57 atmosphere 1000.0 30 > th dose independent rect. 3 8
191 10.57 radiation 30.0 10 < th dose independent rect. 3 8
196 10.58 radiation 40.0 10 < th dose dependent rect. 3 8
202 10.59 atmosphere 1010.0 30 < th dose independent rect. 3 17
212 10.61 atmosphere 995.0 720 > th dose independent sin 20 NA
214 10.61 wind 7.0 90 < th dose independent rect. 3 16
239 10.62 humidity 60.0 30 > th dose independent rect. 3 8
248 10.62 wind 9.0 30 < th dose dependent rect. 3 8
252 10.63 wind 9.0 30 < th dose independent rect. 3 8
253 10.63 temperature 10.0 30 > th dose independent rect. 3 8
257 10.63 atmosphere 1015.0 30 < th dose independent rect. 3 8
259 10.63 temperature 10.0 30 > th dose independent rect. 11 16
261 10.63 precipitation 0.1 30 < th dose independent rect. 11 16
269 10.63 precipitation 0.1 30 < th dose dependent rect. 11 16
270 10.63 temperature 10.0 30 > th dose dependent rect. 3 17
272 10.63 radiation 20.0 10 < th dose dependent rect. 3 23
277 10.64 atmosphere 1000.0 10 > th dose independent rect. 24 11
278 10.64 wind 9.0 30 < th dose independent rect. 11 16
279 10.64 atmosphere 995.0 90 > th dose independent rect. 3 16
280 10.64 atmosphere 1015.0 30 < th dose independent rect. 11 16
290 10.64 temperature 25.0 90 > th dose dependent rect. 24 7
294 10.64 atmosphere 995.0 30 > th dose dependent rect. 3 8
297 10.65 atmosphere 995.0 720 > th dose independent no NA NA
325 10.65 atmosphere 1000.0 270 > th dose independent rect. 12 19
340 10.66 radiation 30.0 10 < th dose independent rect. 12 1
348 10.66 precipitation 0.1 30 < th dose independent rect. 3 8
349 10.66 atmosphere 995.0 1440 > th dose independent rect. 3 13
350 10.66 humidity 90.0 90 < th dose independent rect. 20 16
359 10.66 temperature 10.0 30 > th dose dependent rect. 20 7
362 10.66 precipitation 0.1 30 < th dose dependent rect. 3 8
369 10.67 temperature 15.0 90 > th dose independent rect. 3 16
380 10.68 atmosphere 995.0 720 < th dose independent no NA NA
390 10.68 temperature 30.0 30 < th dose independent rect. 3 8
593 10.69 atmosphere 1000.0 10 > th dose independent rect. 15 20
601 10.69 temperature 10.0 30 > th dose dependent rect. 3 8
603 10.69 temperature 10.0 270 > th dose dependent rect. 3 15
608 10.70 wind 5.0 30 < th dose independent rect. 20 7
620 10.70 atmosphere 1000.0 90 > th dose independent rect. 15 19
626 10.70 radiation 10.0 10 < th dose independent rect. 3 23
636 10.70 wind 9.0 10 < th dose dependent rect. 20 7
662 10.71 atmosphere 1015.0 30 < th dose independent rect. 20 7
673 10.71 atmosphere 995.0 1440 > th dose independent rect. 21 19
676 10.71 wind 9.0 10 < th dose independent rect. 3 23
677 10.71 temperature 15.0 10 > th dose independent rect. 3 23
678 10.71 temperature 15.0 270 > th dose independent rect. 4 23
680 10.71 atmosphere 995.0 720 < th dose dependent no NA NA
880 10.72 wind 1.0 43200 > th dose independent rect. 9 2
881 10.72 wind 1.0 43200 < th dose independent rect. 9 2
885 10.72 precipitation 0.1 30 < th dose independent rect. 20 7
888 10.72 atmosphere 995.0 720 > th dose independent rect. 7 8
889 10.72 atmosphere 1000.0 270 > th dose independent rect. 23 8
893 10.72 humidity 90.0 90 < th dose independent rect. 1 11
897 10.72 humidity 90.0 90 < th dose independent rect. 20 19
912 10.72 precipitation 0.1 30 < th dose dependent rect. 20 7
917 10.72 radiation 40.0 30 < th dose dependent rect. 11 16
929 10.73 temperature 10.0 30 > th dose independent rect. 20 7
930 10.73 temperature 30.0 30 < th dose independent rect. 20 7
934 10.73 humidity 50.0 30 > th dose independent rect. 20 7
938 10.73 atmosphere 995.0 30 > th dose independent rect. 20 7
942 10.73 radiation 1.0 30 < th dose independent rect. 20 7
948 10.73 temperature 10.0 1440 > th dose independent rect. 4 8
951 10.73 atmosphere 995.0 1440 > th dose independent rect. 4 8
961 10.73 humidity 90.0 90 < th dose independent rect. 1 14
967 10.73 temperature 10.0 1440 > th dose independent rect. 12 16
989 10.73 atmosphere 995.0 10 > th dose independent rect. 3 23
996 10.73 atmosphere 995.0 30 > th dose dependent rect. 11 1