Os08g0285600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os08g0285600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.5 | 0.565 | 6.28 | -1.47 | 0.84 | 1.17 | -0.791 | 0.364 | 0.0325 | 18.4 | 25.29 | 686 | -- | -- |
| 144.52 | 0.56 | 6.28 | -1.53 | 0.829 | 1.21 | -0.76 | -- | 0.025 | 18.4 | 25.4 | 684 | -- | -- |
| 145.88 | 0.563 | 6.29 | -1.55 | 0.823 | 1.24 | -- | -0.214 | 0.00407 | 18.3 | 25.26 | 694 | -- | -- |
| 145.85 | 0.562 | 6.28 | -1.51 | 0.839 | 1.18 | -- | -- | 0.0104 | 18.4 | 25.24 | 693 | -- | -- |
| 165.29 | 0.599 | 6.32 | -1.96 | -- | 2 | -- | -2.33 | -0.142 | -- | 24.98 | 565 | -- | -- |
| 172.44 | 0.616 | 6.28 | -1.28 | 1.3 | -- | -0.19 | -- | 0.0965 | 18.8 | -- | -- | -- | -- |
| 172.53 | 0.615 | 6.28 | -1.27 | 1.3 | -- | -- | -- | 0.0959 | 18.8 | -- | -- | -- | -- |
| 167.22 | 0.602 | 6.28 | -1.63 | -- | 1.8 | -- | -- | -0.0762 | -- | 24.7 | 558 | -- | -- |
| 201.57 | 0.661 | 6.23 | -- | 1.08 | 0.803 | -- | -- | 0.29 | 18.6 | 28.4 | 736 | -- | -- |
| 260.47 | 0.754 | 6.25 | -1.3 | -- | -- | -- | -- | 0.0708 | -- | -- | -- | -- | -- |
| 215.26 | 0.686 | 6.25 | -- | 1.31 | -- | -- | -- | 0.238 | 18.7 | -- | -- | -- | -- |
| 234.64 | 0.713 | 6.24 | -- | -- | 1.55 | -- | -- | 0.143 | -- | 25.1 | 529 | -- | -- |
| 305.19 | 0.815 | 6.22 | -- | -- | -- | -- | -- | 0.215 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 142.49 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 12 |
| 4 | 142.86 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 21 |
| 6 | 142.91 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 7 | 142.93 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 19 |
| 10 | 142.99 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 12 | 143.12 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 13 |
| 36 | 143.41 | temperature | 25 | 720 | > th | dose dependent | sin | 0 | NA |
| 41 | 143.48 | radiation | 40 | 4320 | < th | dose dependent | rect. | 16 | 11 |
| 44 | 143.49 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 45 | 143.49 | radiation | 40 | 4320 | < th | dose dependent | rect. | 16 | 4 |
| 49 | 143.51 | radiation | 40 | 4320 | < th | dose dependent | rect. | 16 | 8 |
| 81 | 143.59 | radiation | 1 | 4320 | > th | dose dependent | rect. | 16 | 3 |
| 104 | 143.74 | radiation | 10 | 4320 | < th | dose dependent | rect. | 16 | 13 |
| 115 | 143.84 | radiation | 10 | 4320 | < th | dose dependent | rect. | 16 | 11 |
| 117 | 143.85 | radiation | 10 | 4320 | < th | dose dependent | rect. | 16 | 4 |
| 131 | 143.88 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 132 | 143.88 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 158 | 144.01 | temperature | 25 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 159 | 144.02 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 162 | 144.03 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 163 | 144.03 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 15 |
| 166 | 144.05 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 6 |
| 207 | 144.17 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 211 | 144.19 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 217 | 144.22 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 220 | 144.24 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 21 |
| 229 | 144.27 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 2 |
| 242 | 144.33 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 253 | 144.35 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 12 |
| 263 | 144.39 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 278 | 144.42 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 280 | 144.42 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 17 |
| 287 | 144.43 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 292 | 144.44 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 300 | 144.45 | radiation | 10 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 371 | 144.52 | radiation | 10 | 4320 | < th | dose independent | rect. | 15 | 12 |
| 378 | 144.53 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 380 | 144.53 | radiation | 10 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 383 | 144.53 | radiation | 10 | 4320 | < th | dose independent | rect. | 15 | 9 |
| 391 | 144.53 | humidity | 90 | 43200 | > th | dose dependent | rect. | 15 | 12 |
| 393 | 144.54 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 412 | 144.56 | humidity | 90 | 43200 | > th | dose dependent | rect. | 16 | 9 |
| 442 | 144.59 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 444 | 144.59 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 19 |
| 449 | 144.59 | temperature | 25 | 14400 | > th | dose dependent | rect. | 12 | 9 |
| 452 | 144.60 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 469 | 144.61 | temperature | 25 | 14400 | > th | dose dependent | rect. | 8 | 12 |
| 479 | 144.62 | temperature | 25 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 487 | 144.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 498 | 144.64 | temperature | 20 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 525 | 144.65 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 16 |
| 543 | 144.66 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 9 |
| 545 | 144.66 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 11 |
| 577 | 144.67 | temperature | 25 | 14400 | > th | dose dependent | sin | 21 | NA |
| 592 | 144.67 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 600 | 144.68 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 621 | 144.70 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 650 | 144.71 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 19 |
| 652 | 144.71 | humidity | 90 | 43200 | > th | dose dependent | sin | 15 | NA |
| 665 | 144.72 | temperature | 20 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 696 | 144.74 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 811 | 144.79 | temperature | 30 | 720 | < th | dose independent | rect. | 10 | 8 |
| 824 | 144.79 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 825 | 144.79 | temperature | 25 | 14400 | > th | dose dependent | rect. | 16 | 23 |
| 896 | 144.83 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |