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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0285100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0307) R2 : 0.243
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.57 (0.464) R2dE : 0.24 R2E : 0.239
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0874 (0.0646) R2dN8 : 0.00392 R2N8 : 0.00292
σ : 0.577
deviance : 153.27
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_____
C
peak time of C : --
E
wheather : wind
threshold : 0.1683
memory length : 169
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.93
open length of G : 1.39

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
142.23 0.56 2.92 0.0937 0.00952 2.89 0.521 -23.3 -0.0875 3.75 0.5962 170 2 1.14
154.6 0.579 2.93 0.21 0.0111 4.43 -0.373 -- -0.0796 15.3 0.0027 171 1.97 1.37
142.52 0.556 2.91 0.0794 0.0321 2.87 -- -23.7 -0.0799 5.52 0.6021 172 2.03 1.12
152.43 0.575 2.93 0.178 0.0579 5.57 -- -- -0.0805 15.5 1.274e-05 169 1.96 1.37
142.57 0.556 2.92 0.0869 -- 2.86 -- -23.6 -0.081 -- 0.6036 172 2.02 1.12
200.02 0.663 2.92 0.157 0.143 -- -0.0351 -- -0.0715 5.19 -- -- -- --
200.02 0.662 2.92 0.157 0.143 -- -- -- -0.0714 5.14 -- -- -- --
152.42 0.575 2.92 0.179 -- 5.58 -- -- -0.0674 -- 0.06174 169 1.93 1.4
153.26 0.577 2.93 -- 0.0557 5.55 -- -- -0.0891 14 0.0311 169 1.96 1.36
201.09 0.663 2.92 0.162 -- -- -- -- -0.0678 -- -- -- -- --
200.67 0.663 2.92 -- 0.146 -- -- -- -0.0888 5.1 -- -- -- --
153.27 0.577 2.93 -- -- 5.57 -- -- -0.0874 -- 0.1683 169 1.93 1.39
201.78 0.663 2.92 -- -- -- -- -- -0.0857 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 160.12 wind 1.0 90 < th dose independent rect. 2 1
2 170.90 wind 1.0 90 < th dose dependent rect. 2 1
3 172.06 wind 7.0 1440 > th dose independent rect. 4 1
6 172.07 wind 7.0 1440 > th dose dependent rect. 4 1
13 174.93 wind 1.0 270 < th dose dependent rect. 23 4
24 179.00 wind 1.0 270 < th dose dependent rect. 21 6
26 179.26 wind 1.0 270 < th dose dependent rect. 16 11
36 180.21 wind 1.0 270 < th dose dependent rect. 9 18
54 180.99 wind 7.0 90 > th dose independent rect. 23 6
61 181.01 wind 7.0 90 > th dose dependent rect. 23 6
72 181.05 wind 1.0 30 > th dose dependent rect. 2 1
81 181.09 precipitation 0.1 270 > th dose independent rect. 22 1
83 181.09 precipitation 0.1 270 > th dose dependent rect. 22 1
84 181.10 wind 5.0 90 > th dose independent rect. 1 1
92 181.10 wind 5.0 90 > th dose dependent rect. 1 1
128 181.61 wind 1.0 270 < th dose independent rect. 13 14
131 181.72 wind 1.0 270 < th dose independent rect. 9 18
148 182.12 wind 3.0 10 > th dose independent rect. 2 1
189 183.20 wind 1.0 270 < th dose dependent sin 15 NA
314 185.62 wind 1.0 270 < th dose independent sin 14 NA
351 186.01 wind 1.0 270 > th dose independent sin 13 NA
389 186.57 atmosphere 1005.0 10 < th dose dependent rect. 1 9
390 186.57 atmosphere 1005.0 90 < th dose dependent rect. 24 10
396 186.64 temperature 30.0 90 > th dose dependent rect. 18 16
397 186.65 atmosphere 1000.0 10 < th dose independent rect. 4 7
400 186.66 atmosphere 1000.0 90 < th dose independent rect. 3 7
415 186.85 temperature 30.0 90 > th dose dependent rect. 8 1
442 186.92 temperature 30.0 90 > th dose independent rect. 8 1
464 187.00 wind 1.0 90 < th dose dependent rect. 2 8
525 187.20 atmosphere 1000.0 270 < th dose independent rect. 1 9
575 187.43 atmosphere 1000.0 10 < th dose independent rect. 2 9
635 187.80 wind 1.0 90 < th dose independent rect. 2 9
640 187.82 atmosphere 1000.0 10 < th dose dependent rect. 4 7
654 187.89 wind 1.0 90 < th dose dependent rect. 2 21
658 187.90 atmosphere 1000.0 90 < th dose dependent rect. 4 6
668 187.95 wind 1.0 90 < th dose dependent rect. 2 19
670 187.97 wind 1.0 90 < th dose dependent rect. 2 16
693 188.09 wind 1.0 270 < th dose dependent rect. 23 11
704 188.14 atmosphere 1010.0 10 < th dose dependent rect. 2 1
723 188.30 wind 1.0 270 < th dose dependent rect. 16 18
726 188.31 wind 1.0 270 < th dose dependent rect. 19 15
739 188.34 wind 1.0 270 < th dose dependent rect. 23 23
778 188.50 wind 1.0 270 < th dose dependent rect. 23 18
872 188.74 wind 1.0 270 < th dose dependent rect. 21 23
874 188.75 wind 1.0 90 < th dose independent rect. 2 21
875 188.75 wind 1.0 270 < th dose dependent no NA NA
899 188.80 atmosphere 1005.0 90 < th dose dependent rect. 24 7
928 188.89 wind 1.0 90 < th dose independent rect. 2 19
953 188.91 wind 1.0 90 < th dose independent rect. 2 16