FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0282200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.79 (0.0145) R2 : 0.0141
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.078 (0.0305) R2dN8 : 0.0182 R2N8 : 0.0141
σ : 0.273
deviance : 34.19
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.45 0.272 2.79 0.0153 0.0169 -0.00111 -0.0597 1.17 0.0828 2.23 1.2 12 -- --
33.83 0.273 2.79 -0.00622 0.00657 0.175 -0.0372 -- 0.082 19.9 1.2 12 -- --
33.46 0.269 2.79 0.0197 0.0182 -0.00896 -- 1.18 0.0817 3.22 1.2 12 -- --
33.83 0.273 2.79 -0.00516 0.00771 0.171 -- -- 0.0818 22.5 1.2 12 -- --
33.48 0.27 2.79 0.0186 -- -0.000101 -- 1.18 0.0854 -- 1.2 12 -- --
34.14 0.274 2.79 0.00813 0.0269 -- 0.046 -- 0.0785 2.98 -- -- -- --
34.15 0.274 2.79 0.00712 0.027 -- -- -- 0.0782 2.67 -- -- -- --
33.84 0.272 2.79 -0.00514 -- 0.173 -- -- 0.0818 -- 1.2 12 -- --
33.83 0.272 2.79 -- 0.0077 0.17 -- -- 0.0823 22.5 1.2 12 -- --
34.19 0.273 2.79 0.00827 -- -- -- -- 0.0789 -- -- -- -- --
34.15 0.273 2.79 -- 0.0271 -- -- -- 0.0774 2.67 -- -- -- --
33.84 0.272 2.79 -- -- 0.172 -- -- 0.0824 -- 1.2 12 -- --
34.19 0.273 2.79 -- -- -- -- -- 0.078 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.65 wind 1.0 10 < th dose independent rect. 22 1
3 28.65 wind 1.0 10 < th dose dependent rect. 22 1
5 31.24 radiation 1.0 90 < th dose independent rect. 14 1
6 31.24 radiation 1.0 90 < th dose dependent rect. 14 1
7 31.25 temperature 20.0 90 < th dose independent rect. 14 2
8 31.25 temperature 20.0 30 < th dose dependent rect. 14 2
30 31.27 temperature 20.0 90 < th dose dependent rect. 12 4
31 31.27 temperature 20.0 10 < th dose dependent rect. 12 5
59 31.54 temperature 20.0 90 < th dose independent rect. 12 4
90 32.26 atmosphere 1005.0 30 > th dose dependent rect. 15 1
108 32.48 atmosphere 1005.0 30 > th dose independent rect. 15 1
123 32.54 humidity 80.0 30 < th dose independent rect. 1 1
133 32.54 humidity 80.0 30 < th dose dependent rect. 1 1
153 32.61 humidity 70.0 90 > th dose independent rect. 14 1
164 32.63 humidity 80.0 10 > th dose dependent rect. 16 1
174 32.64 humidity 80.0 10 > th dose dependent rect. 14 2
183 32.65 humidity 80.0 10 > th dose independent rect. 14 2
245 32.74 temperature 20.0 270 < th dose independent rect. 12 1
272 32.77 radiation 1.0 270 < th dose independent rect. 12 3
328 32.88 radiation 1.0 10 < th dose independent rect. 16 1
365 32.92 wind 1.0 30 > th dose independent rect. 24 16
382 32.96 temperature 25.0 30 > th dose independent rect. 21 1
384 32.96 wind 3.0 10 < th dose dependent rect. 20 2
412 33.00 wind 3.0 30 > th dose independent rect. 15 1
414 33.00 wind 1.0 10 > th dose independent rect. 15 14
436 33.03 radiation 20.0 30 < th dose dependent rect. 14 2
496 33.11 wind 5.0 10 < th dose independent rect. 16 1
535 33.14 wind 1.0 10 > th dose independent rect. 12 17
547 33.15 humidity 60.0 30 > th dose dependent rect. 12 4
623 33.21 radiation 20.0 30 < th dose independent rect. 15 1
667 33.23 humidity 70.0 90 > th dose independent rect. 14 15
679 33.24 temperature 10.0 1440 > th dose independent rect. 17 8
683 33.24 radiation 30.0 1440 < th dose independent rect. 17 8
690 33.24 temperature 10.0 1440 > th dose independent rect. 1 16
705 33.25 wind 9.0 30 < th dose independent rect. 24 16
724 33.26 precipitation 0.1 30 < th dose independent rect. 16 8
726 33.26 precipitation 0.1 30 < th dose independent rect. 24 16
728 33.26 atmosphere 1005.0 10 > th dose dependent rect. 1 1
733 33.26 precipitation 0.1 30 < th dose dependent rect. 16 8
735 33.26 precipitation 0.1 30 < th dose dependent rect. 24 16
740 33.27 wind 9.0 30 < th dose independent rect. 16 8
741 33.27 temperature 10.0 30 > th dose independent rect. 16 8
742 33.27 atmosphere 995.0 30 > th dose independent rect. 16 8
744 33.27 radiation 20.0 30 < th dose independent rect. 16 8
748 33.27 temperature 10.0 30 > th dose independent rect. 24 16
750 33.27 atmosphere 995.0 30 > th dose independent rect. 24 16
752 33.27 atmosphere 1015.0 30 < th dose independent rect. 24 16
765 33.28 humidity 90.0 1440 > th dose independent rect. 10 1
770 33.28 humidity 50.0 30 > th dose independent rect. 16 8
772 33.28 humidity 90.0 1440 > th dose dependent rect. 10 1
788 33.29 humidity 50.0 30 > th dose independent rect. 24 16
795 33.29 radiation 1.0 30 < th dose dependent rect. 24 17
801 33.30 temperature 30.0 30 < th dose independent rect. 16 8
804 33.30 temperature 30.0 90 < th dose independent rect. 24 16
805 33.30 radiation 1.0 30 < th dose independent rect. 24 17
810 33.31 precipitation 0.1 1440 > th dose independent rect. 8 1
821 33.31 precipitation 0.1 1440 > th dose dependent rect. 8 1
878 33.33 radiation 1.0 30 > th dose independent rect. 16 23
879 33.33 atmosphere 1005.0 270 > th dose dependent rect. 12 1
899 33.34 wind 1.0 30 < th dose dependent rect. 23 4
942 33.37 humidity 90.0 30 < th dose independent rect. 15 1
945 33.37 wind 3.0 30 > th dose independent rect. 12 4
946 33.37 wind 1.0 30 < th dose independent rect. 23 4
947 33.37 atmosphere 1005.0 30 > th dose independent rect. 12 4
951 33.37 wind 1.0 10 < th dose independent rect. 22 7
952 33.37 wind 1.0 10 > th dose independent rect. 16 8
959 33.37 wind 1.0 10 > th dose independent rect. 12 21
962 33.37 radiation 40.0 30 < th dose dependent rect. 16 8
966 33.37 wind 1.0 30 < th dose dependent rect. 11 16
967 33.37 atmosphere 995.0 30 > th dose dependent rect. 24 16
980 33.38 humidity 70.0 270 > th dose independent rect. 12 16
984 33.38 wind 3.0 30 < th dose dependent rect. 24 1
987 33.38 atmosphere 1005.0 270 > th dose dependent rect. 12 4
993 33.38 atmosphere 995.0 30 > th dose dependent rect. 16 8
997 33.38 wind 1.0 30 < th dose dependent rect. 6 21
998 33.39 wind 1.0 10 > th dose independent sin 14 NA
999 33.39 wind 3.0 10 < th dose independent rect. 1 1