Os08g0281400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os08g0281400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.28 | 0.165 | 10.8 | -0.0676 | 0.74 | -0.463 | -0.446 | -0.763 | 0.0351 | 0.579 | 24.1 | 17 | -- | -- |
| 12.97 | 0.169 | 10.8 | -0.175 | 0.73 | -0.388 | -0.682 | -- | 0.0131 | 0.577 | 24.19 | 8 | -- | -- |
| 12.87 | 0.168 | 10.8 | -0.005 | 0.747 | -0.495 | -- | -1.11 | 0.0461 | 0.579 | 24.1 | 17 | -- | -- |
| 14.93 | 0.181 | 10.8 | -0.15 | 0.738 | -0.382 | -- | -- | 0.00902 | 0.599 | 24.8 | 8 | -- | -- |
| 40.34 | 0.297 | 10.7 | 0.2 | -- | 0.415 | -- | -0.894 | 0.207 | -- | 30.29 | 5 | -- | -- |
| 15.13 | 0.182 | 10.8 | -0.0867 | 0.663 | -- | -0.678 | -- | 0.0778 | 0.542 | -- | -- | -- | -- |
| 17.1 | 0.194 | 10.8 | -0.0609 | 0.665 | -- | -- | -- | 0.0812 | 0.533 | -- | -- | -- | -- |
| 41.41 | 0.301 | 10.7 | 0.0521 | -- | 0.409 | -- | -- | 0.168 | -- | 30.1 | 3 | -- | -- |
| 15.47 | 0.184 | 10.8 | -- | 0.725 | -0.325 | -- | -- | 0.035 | 0.581 | 24.8 | 8 | -- | -- |
| 44.82 | 0.313 | 10.8 | -0.0377 | -- | -- | -- | -- | 0.0925 | -- | -- | -- | -- | -- |
| 17.2 | 0.194 | 10.8 | -- | 0.664 | -- | -- | -- | 0.088 | 0.529 | -- | -- | -- | -- |
| 41.48 | 0.3 | 10.7 | -- | -- | 0.401 | -- | -- | 0.162 | -- | 30.1 | 2 | -- | -- |
| 44.86 | 0.313 | 10.8 | -- | -- | -- | -- | -- | 0.0966 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.47 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 13 |
| 8 | 11.57 | temperature | 25 | 720 | < th | dose independent | sin | 15 | NA |
| 15 | 11.60 | temperature | 25 | 720 | > th | dose independent | sin | 16 | NA |
| 19 | 11.62 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 13 |
| 21 | 11.62 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 17 |
| 98 | 11.86 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 7 |
| 119 | 11.89 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 10 |
| 181 | 12.00 | temperature | 20 | 10 | > th | dose dependent | sin | 11 | NA |
| 226 | 12.06 | temperature | 30 | 10 | < th | dose dependent | sin | 12 | NA |
| 238 | 12.08 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 262 | 12.11 | temperature | 25 | 270 | < th | dose dependent | sin | 14 | NA |
| 266 | 12.12 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 7 |
| 289 | 12.14 | temperature | 10 | 270 | > th | dose dependent | sin | 13 | NA |
| 290 | 12.14 | temperature | 20 | 720 | > th | dose dependent | sin | 15 | NA |
| 296 | 12.14 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 21 |
| 314 | 12.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 12 |
| 317 | 12.15 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 19 |
| 331 | 12.16 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 349 | 12.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 13 |
| 380 | 12.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 385 | 12.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 16 |
| 426 | 12.21 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 428 | 12.21 | temperature | 25 | 30 | < th | dose dependent | rect. | 14 | 14 |
| 443 | 12.22 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 453 | 12.22 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 479 | 12.23 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 12 |
| 500 | 12.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 525 | 12.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 571 | 12.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 597 | 12.28 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 727 | 12.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 18 |
| 729 | 12.32 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 815 | 12.35 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 827 | 12.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 841 | 12.36 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 882 | 12.38 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 899 | 12.38 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 901 | 12.38 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 903 | 12.39 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 924 | 12.39 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 925 | 12.39 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 926 | 12.39 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 966 | 12.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 1 |