Os08g0280300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Oligopeptide transporter OPT superfamily protein.
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Os08g0280300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Oligopeptide transporter OPT superfamily protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 263.2 | 0.762 | 3.15 | 0.00306 | 0.11 | 7.41 | -0.0124 | -32.4 | -0.191 | 5.61 | 1005 | 53 | 5.63 | 3.35 |
| 277.5 | 0.782 | 3.13 | 0.148 | 0.157 | 2 | -0.499 | -- | -0.219 | 6.54 | 1005 | 53 | 5.63 | 3.35 |
| 262.11 | 0.754 | 3.15 | 0.0227 | 0.111 | 7.72 | -- | -33.7 | -0.178 | 4.48 | 1004 | 50 | 5.72 | 3.41 |
| 277.63 | 0.776 | 3.13 | 0.147 | 0.145 | 2.25 | -- | -- | -0.213 | 5.97 | 1006 | 41 | 5.54 | 3.52 |
| 261.29 | 0.753 | 3.16 | -0.109 | -- | 11.5 | -- | -56.2 | -0.175 | -- | 1004 | 83 | 5.6 | 3.05 |
| 290.87 | 0.8 | 3.14 | 0.164 | 0.24 | -- | -0.372 | -- | -0.245 | 6.46 | -- | -- | -- | -- |
| 291.21 | 0.799 | 3.14 | 0.158 | 0.239 | -- | -- | -- | -0.244 | 6.35 | -- | -- | -- | -- |
| 278.65 | 0.777 | 3.13 | 0.152 | -- | 2.34 | -- | -- | -0.207 | -- | 1006 | 37 | 5.57 | 3.54 |
| 278.21 | 0.777 | 3.13 | -- | 0.147 | 2.27 | -- | -- | -0.227 | 5.89 | 1006 | 38 | 5.57 | 3.56 |
| 294.18 | 0.801 | 3.14 | 0.165 | -- | -- | -- | -- | -0.239 | -- | -- | -- | -- | -- |
| 291.87 | 0.799 | 3.14 | -- | 0.241 | -- | -- | -- | -0.262 | 6.31 | -- | -- | -- | -- |
| 279.25 | 0.778 | 3.14 | -- | -- | 2.36 | -- | -- | -0.224 | -- | 1006 | 33 | 5.63 | 3.5 |
| 294.9 | 0.802 | 3.14 | -- | -- | -- | -- | -- | -0.257 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 267.68 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 2 | 268.50 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 6 | 2 |
| 4 | 268.71 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 9 | 269.30 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 15 | 269.66 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 6 |
| 18 | 269.75 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 33 | 269.75 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 50 | 269.87 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 59 | 270.39 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 72 | 272.55 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 74 | 272.70 | wind | 1.0 | 30 | < th | dose independent | rect. | 7 | 1 |
| 81 | 273.69 | humidity | 50.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 173 | 273.69 | humidity | 50.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 272 | 274.93 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 275 | 275.30 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 3 | 7 |
| 318 | 275.50 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 324 | 275.73 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 333 | 276.29 | wind | 1.0 | 720 | < th | dose independent | rect. | 23 | 2 |
| 334 | 276.29 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 3 | 19 |
| 337 | 276.41 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 343 | 276.53 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 3 | 13 |
| 353 | 276.56 | humidity | 90.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 371 | 277.03 | wind | 1.0 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 372 | 277.07 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 373 | 277.07 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 431 | 278.33 | wind | 9.0 | 90 | > th | dose independent | rect. | 20 | 14 |
| 437 | 278.43 | wind | 7.0 | 90 | > th | dose independent | rect. | 21 | 1 |
| 438 | 278.43 | wind | 9.0 | 90 | > th | dose dependent | rect. | 20 | 14 |
| 441 | 278.48 | wind | 7.0 | 90 | > th | dose dependent | rect. | 21 | 1 |
| 442 | 278.49 | wind | 3.0 | 30 | < th | dose dependent | rect. | 7 | 1 |
| 458 | 278.51 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 5 |
| 459 | 278.52 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 460 | 278.52 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 466 | 278.55 | wind | 9.0 | 90 | > th | dose independent | rect. | 20 | 6 |
| 492 | 278.62 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 495 | 278.62 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 511 | 278.64 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 545 | 278.74 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 554 | 278.77 | wind | 1.0 | 720 | > th | dose independent | rect. | 17 | 8 |
| 555 | 278.77 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 565 | 278.79 | wind | 9.0 | 10 | > th | dose independent | rect. | 21 | 14 |
| 568 | 278.79 | wind | 9.0 | 10 | > th | dose dependent | rect. | 21 | 14 |
| 623 | 278.81 | wind | 7.0 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 641 | 278.86 | wind | 9.0 | 90 | > th | dose dependent | rect. | 18 | 5 |
| 648 | 278.88 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 655 | 278.89 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 666 | 278.91 | wind | 1.0 | 720 | < th | dose independent | rect. | 18 | 7 |
| 671 | 278.93 | wind | 1.0 | 720 | < th | dose independent | rect. | 16 | 5 |
| 675 | 278.94 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 677 | 278.94 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 700 | 279.00 | wind | 1.0 | 720 | < th | dose independent | rect. | 20 | 5 |
| 708 | 279.02 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 744 | 279.13 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 771 | 279.19 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 782 | 279.20 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 18 | NA |
| 793 | 279.22 | wind | 5.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 794 | 279.22 | wind | 5.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 834 | 279.33 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 841 | 279.35 | radiation | 1.0 | 1440 | < th | dose independent | sin | 18 | NA |
| 899 | 279.48 | wind | 9.0 | 90 | > th | dose independent | rect. | 18 | 5 |
| 977 | 279.64 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 998 | 279.71 | radiation | 1.0 | 1440 | > th | dose independent | sin | 18 | NA |