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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0280100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phytase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.62 (0.0496) R2 : 0.832
β1 : -4.12 (0.203) R2dD : 0.258 R2D : 0.405
β2 : 2.21 (0.114) R2dC : 0.148 R2C : 0.16
β3 : -2.53 (0.162) R2dE : 0.164 R2E : 0.335
β4 : -5.76 (0.44) R2dD*C : 0.0652 R2D*C : 0.0973
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.386 (0.119) R2dN8 : 0.00992 R2N8 : 0.0191
σ : 0.89
deviance : 365.2
__
_____
C
peak time of C : 13.2
E
wheather : temperature
threshold : 21
memory length : 5184
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 4.64
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
352.3 0.882 4.58 -4.15 2.26 -2.32 -5.78 1.82 -0.404 13.2 21.21 5181 4.52 --
365.2 0.89 4.62 -4.12 2.21 -2.53 -5.76 -- -0.386 13.2 21 5184 4.64 --
488.57 1.03 4.63 -4.55 2.36 -2.42 -- 1.03 -0.49 13.3 21.19 5184 3.31 --
489.74 1.03 4.66 -4.81 2.39 -2.54 -- -- -0.54 13.3 21.2 5158 2.48 --
751.04 1.28 4.72 -4.55 -- -3.02 -- 1.82 -0.614 -- 21.22 3387 5.57 --
538.43 1.09 4.88 -6.19 2.29 -- -5.92 -- -1.5 13.6 -- -- -- --
678.44 1.22 4.91 -6.38 2.3 -- -- -- -1.54 13.7 -- -- -- --
699.47 1.23 4.68 -4.67 -- -3.57 -- -- -0.571 -- 20.6 3600 9.05 --
540.41 1.08 4.45 -- 2.29 -5.32 -- -- 0.493 13.6 18.53 44113 2.67 --
1000.66 1.48 4.93 -6.48 -- -- -- -- -1.59 -- -- -- -- --
1752.43 1.96 4.75 -- 2.42 -- -- -- -0.825 13.8 -- -- -- --
837.9 1.35 4.45 -- -- -5.42 -- -- 0.544 -- 18.67 47520 7.32 --
2107.21 2.14 4.77 -- -- -- -- -- -0.869 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 302.67 temperature 15 43200 > th dose independent rect. 24 1
5 305.57 temperature 15 43200 < th dose independent rect. 24 1
63 316.10 radiation 30 43200 > th dose dependent rect. 16 16
69 316.84 radiation 30 43200 > th dose dependent rect. 7 1
86 316.98 temperature 15 43200 < th dose dependent rect. 1 1
91 317.36 temperature 15 43200 < th dose dependent rect. 23 3
114 318.87 radiation 40 43200 < th dose independent rect. 16 16
122 319.38 radiation 30 43200 > th dose independent rect. 16 16
127 319.58 radiation 30 43200 > th dose independent rect. 7 1
145 319.93 radiation 40 43200 < th dose independent rect. 6 2
147 319.96 radiation 40 43200 < th dose independent rect. 4 4
148 319.97 radiation 40 43200 < th dose independent rect. 18 14
155 320.15 temperature 15 43200 > th dose independent sin 11 NA
163 320.31 radiation 40 43200 < th dose independent rect. 2 6
194 321.34 temperature 15 43200 > th dose independent rect. 21 15
197 321.46 temperature 15 43200 > th dose independent rect. 23 13
214 322.03 radiation 40 43200 < th dose independent rect. 15 8
220 322.18 radiation 40 43200 < th dose independent rect. 15 12
227 322.24 radiation 40 43200 < th dose independent rect. 15 14
229 322.26 radiation 40 43200 < th dose independent rect. 15 4
239 322.33 radiation 40 43200 < th dose independent rect. 15 2
283 323.52 temperature 15 43200 < th dose independent sin 11 NA
285 323.60 temperature 15 43200 > th dose independent rect. 10 19
329 324.55 temperature 15 43200 < th dose independent rect. 23 13
332 324.61 temperature 15 43200 < th dose independent rect. 21 15
338 324.66 atmosphere 1015 43200 > th dose dependent rect. 20 1
460 326.72 temperature 15 43200 > th dose independent rect. 11 1
499 327.41 atmosphere 1015 43200 > th dose dependent rect. 17 5
504 327.49 temperature 15 43200 < th dose independent rect. 10 19
531 327.95 radiation 1 43200 > th dose independent rect. 10 1
533 327.99 radiation 1 43200 < th dose independent rect. 10 1
534 327.99 radiation 1 43200 < th dose dependent rect. 10 1
574 328.51 temperature 15 43200 > th dose independent no NA NA
579 328.58 atmosphere 1015 43200 > th dose dependent rect. 14 9
663 330.29 temperature 15 43200 < th dose independent rect. 10 2
684 330.79 temperature 15 43200 < th dose dependent sin 11 NA
701 331.05 temperature 15 43200 > th dose independent rect. 2 23
798 332.92 temperature 15 43200 < th dose independent rect. 23 23
799 332.93 temperature 15 43200 < th dose independent no NA NA
801 332.94 temperature 20 43200 > th dose independent rect. 14 1
825 333.27 temperature 15 43200 < th dose independent rect. 4 23
833 333.33 temperature 20 43200 < th dose dependent rect. 14 1
834 333.34 atmosphere 1015 43200 < th dose independent rect. 18 2
845 333.54 temperature 20 43200 < th dose independent rect. 14 1
853 333.65 radiation 1 43200 > th dose independent rect. 8 3
862 333.79 radiation 1 43200 < th dose independent rect. 8 3
918 334.71 atmosphere 1015 43200 > th dose independent rect. 15 6
962 335.75 radiation 10 43200 > th dose dependent rect. 17 13