Os08g0277200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44).
FiT-DB / Search/ Help/ Sample detail
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Os08g0277200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 758.14 | 1.29 | 6.47 | 1.97 | 1.14 | -6.64 | 3.84 | -14.1 | 1.55 | 12.2 | 0.1696 | 4307 | 8.3 | -- |
| 914.52 | 1.41 | 6.71 | -0.477 | 1.47 | -4.51 | 3.79 | -- | 1.21 | 11.3 | 0.1687 | 4240 | 8.54 | -- |
| 794.73 | 1.31 | 6.38 | 1.58 | 0.808 | -6.53 | -- | -13.6 | 1.61 | 12.1 | 2.821e-05 | 4338 | 9.5 | -- |
| 931.21 | 1.42 | 6.64 | -0.501 | 3.25 | -6.3 | -- | -- | 1.26 | 9.84 | 0.09706 | 4087 | 7.08 | -- |
| 793.26 | 1.31 | 6.48 | 1.41 | -- | -6.87 | -- | -13.2 | 1.5 | -- | 8.98e-07 | 4380 | 8.56 | -- |
| 1284.34 | 1.68 | 6.6 | 0.365 | 0.774 | -- | 2.86 | -- | 1.79 | 12 | -- | -- | -- | -- |
| 1319.63 | 1.7 | 6.6 | 0.477 | 0.766 | -- | -- | -- | 1.8 | 11.7 | -- | -- | -- | -- |
| 990.97 | 1.47 | 6.76 | -0.802 | -- | -4.79 | -- | -- | 0.967 | -- | 0.7883 | 4389 | 8.08 | -- |
| 931.01 | 1.42 | 6.66 | -- | 3.35 | -6.28 | -- | -- | 1.28 | 10.1 | 0.1699 | 4087 | 6.43 | -- |
| 1356.55 | 1.72 | 6.61 | 0.455 | -- | -- | -- | -- | 1.8 | -- | -- | -- | -- | -- |
| 1325.62 | 1.7 | 6.61 | -- | 0.761 | -- | -- | -- | 1.75 | 11.6 | -- | -- | -- | -- |
| 965.54 | 1.45 | 6.76 | -- | -- | -4.02 | -- | -- | 1.24 | -- | 1.263 | 4383 | 5.94 | -- |
| 1362.01 | 1.72 | 6.62 | -- | -- | -- | -- | -- | 1.75 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 705.14 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 2 | 716.24 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 26 | 743.10 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 27 | 745.20 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 29 | 745.74 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 32 | 747.96 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 35 | 749.12 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 37 | 749.96 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 13 | 13 |
| 39 | 750.08 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 19 | 7 |
| 42 | 750.98 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 16 | 9 |
| 54 | 752.97 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 57 | 753.68 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 61 | 753.84 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 62 | 753.88 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 70 | 755.27 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 17 | NA |
| 71 | 755.47 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 19 | 11 |
| 88 | 757.06 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 18 |
| 92 | 757.36 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 98 | 758.00 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 22 | 4 |
| 104 | 758.24 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 105 | 758.28 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 19 | 7 |
| 117 | 758.97 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 130 | 759.72 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 5 | 23 |
| 145 | 760.45 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 160 | 761.23 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 22 | 22 |
| 166 | 761.50 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 19 | 17 |
| 167 | 761.55 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 170 | 761.64 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 172 | 761.71 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 200 | 762.95 | humidity | 80.0 | 43200 | > th | dose dependent | no | NA | NA |
| 230 | 763.81 | atmosphere | 1010.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 241 | 764.08 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 242 | 764.11 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 16 | 23 |
| 270 | 765.14 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 332 | 766.69 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 23 | 13 |
| 364 | 767.60 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 14 | 12 |
| 429 | 769.64 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 448 | 770.17 | atmosphere | 1010.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 472 | 770.76 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 494 | 771.21 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 500 | 771.41 | humidity | 90.0 | 43200 | > th | dose independent | sin | 14 | NA |
| 521 | 771.97 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 589 | 773.77 | humidity | 90.0 | 43200 | < th | dose independent | sin | 15 | NA |
| 604 | 774.22 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 634 | 774.97 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 23 | 13 |
| 700 | 776.81 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 733 | 777.49 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 735 | 777.49 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 782 | 778.34 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 10 | 21 |
| 811 | 779.08 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 3 | 16 |
| 816 | 779.14 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 843 | 779.74 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 852 | 779.88 | atmosphere | 1010.0 | 14400 | > th | dose independent | no | NA | NA |
| 873 | 780.39 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 23 | 23 |
| 875 | 780.40 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 890 | 780.79 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 909 | 781.18 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 15 | 18 |
| 922 | 781.29 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 923 | 781.29 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 984 | 782.56 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 11 | 1 |