Os08g0276200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to WRKY transcription factor 44 (WRKY DNA-binding protein 44) (TRANSPARENT TESTA GLABRA 2).
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Os08g0276200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to WRKY transcription factor 44 (WRKY DNA-binding protein 44) (TRANSPARENT TESTA GLABRA 2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.12 | 0.254 | 10 | 0.904 | 0.404 | 0.464 | -0.568 | 1.1 | 0.103 | 8.52 | 9.918 | 108 | -- | -- |
| 30.03 | 0.255 | 10 | 0.748 | 0.402 | 0.512 | -0.529 | -- | 0.0542 | 8.26 | 15.01 | 107 | -- | -- |
| 29.46 | 0.253 | 10 | 1 | 0.482 | 0.395 | -- | 1.61 | 0.139 | 9.08 | -14.94 | 460 | -- | -- |
| 30.88 | 0.259 | 10 | 0.731 | 0.402 | 0.49 | -- | -- | 0.058 | 8.51 | 14.92 | 108 | -- | -- |
| 38.06 | 0.289 | 10 | 0.821 | -- | 0.537 | -- | 0.694 | 0.081 | -- | -10.65 | 4505 | -- | -- |
| 32.74 | 0.268 | 10 | 0.844 | 0.399 | -- | -0.401 | -- | 0.128 | 9.63 | -- | -- | -- | -- |
| 33.31 | 0.27 | 10 | 0.829 | 0.399 | -- | -- | -- | 0.128 | 9.87 | -- | -- | -- | -- |
| 38.47 | 0.289 | 10.1 | 0.725 | -- | 0.551 | -- | -- | 0.0543 | -- | -11.13 | 4 | -- | -- |
| 43.4 | 0.307 | 10.1 | -- | 0.458 | 0.86 | -- | -- | -0.0632 | 7.6 | 12.56 | 137 | -- | -- |
| 42.84 | 0.306 | 10 | 0.825 | -- | -- | -- | -- | 0.128 | -- | -- | -- | -- | -- |
| 51.45 | 0.336 | 10 | -- | 0.397 | -- | -- | -- | 0.0354 | 9.72 | -- | -- | -- | -- |
| 51.53 | 0.334 | 10.1 | -- | -- | 0.779 | -- | -- | -0.0518 | -- | 11.09 | 5 | -- | -- |
| 60.8 | 0.364 | 10.1 | -- | -- | -- | -- | -- | 0.0363 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.27 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 2 | 25.36 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 5 | 25.56 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 3 |
| 6 | 25.65 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 87 | 27.03 | temperature | 10 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 220 | 27.87 | temperature | 25 | 90 | < th | dose independent | rect. | 20 | 15 |
| 231 | 27.89 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 9 |
| 239 | 27.92 | temperature | 25 | 90 | < th | dose independent | sin | 10 | NA |
| 245 | 27.94 | temperature | 25 | 720 | < th | dose independent | sin | 10 | NA |
| 250 | 27.96 | temperature | 25 | 4320 | > th | dose independent | sin | 11 | NA |
| 255 | 27.98 | temperature | 25 | 4320 | < th | dose independent | sin | 11 | NA |
| 335 | 28.24 | temperature | 25 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 338 | 28.24 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 10 |
| 377 | 28.32 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 3 |
| 382 | 28.33 | temperature | 25 | 720 | > th | dose independent | sin | 8 | NA |
| 402 | 28.36 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 406 | 28.37 | temperature | 25 | 90 | < th | dose independent | rect. | 17 | 18 |
| 424 | 28.41 | temperature | 25 | 720 | > th | dose independent | rect. | 3 | 6 |
| 600 | 28.66 | temperature | 25 | 90 | > th | dose independent | rect. | 13 | 23 |
| 653 | 28.73 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 668 | 28.75 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 1 | 8 |
| 763 | 28.85 | temperature | 25 | 90 | < th | dose independent | rect. | 13 | 22 |
| 834 | 28.91 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 20 |
| 851 | 28.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 894 | 28.95 | temperature | 15 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 921 | 28.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 19 |
| 966 | 29.00 | wind | 9 | 10 | < th | dose independent | rect. | 13 | 23 |
| 975 | 29.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 984 | 29.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 14 |
| 987 | 29.01 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 22 |
| 998 | 29.03 | temperature | 25 | 90 | > th | dose independent | sin | 10 | NA |