Os08g0275200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os08g0275200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.32 | 0.201 | 2.86 | -0.0918 | 0.0188 | 2.21 | 0.0709 | -10.1 | 0.0246 | 6.19 | 49.75 | 10 | 6.12 | -- |
| 24.42 | 0.23 | 2.8 | -0.00243 | 0.0226 | 3.04 | 0.184 | -- | 0.0617 | 18.9 | 55.26 | 25 | 5.86 | -- |
| 18.27 | 0.199 | 2.86 | -0.0853 | 0.0164 | 2.29 | -- | -10.4 | 0.0304 | 7.35 | 50.38 | 9 | 6.07 | -- |
| 19.11 | 0.204 | 2.86 | -0.0373 | 0.0201 | 4.4 | -- | -- | 0.00574 | 8.15 | 59.43 | 24 | 6.16 | -- |
| 18.27 | 0.199 | 2.86 | -0.0726 | -- | 2.13 | -- | -9.78 | 0.0301 | -- | 52.17 | 9 | 6 | -- |
| 37.89 | 0.289 | 2.86 | -0.107 | 0.0509 | -- | -0.23 | -- | 0.0102 | 9.47 | -- | -- | -- | -- |
| 38.08 | 0.289 | 2.86 | -0.116 | 0.0528 | -- | -- | -- | 0.00968 | 9.03 | -- | -- | -- | -- |
| 18.61 | 0.201 | 2.86 | -0.016 | -- | 4.45 | -- | -- | 0.0399 | -- | 59.43 | 23 | 6.18 | -- |
| 18.61 | 0.201 | 2.86 | -- | 0.0101 | 4.41 | -- | -- | 0.0326 | 7.96 | 59.43 | 23 | 6.16 | -- |
| 38.24 | 0.289 | 2.86 | -0.116 | -- | -- | -- | -- | 0.01 | -- | -- | -- | -- | -- |
| 38.43 | 0.29 | 2.86 | -- | 0.0527 | -- | -- | -- | 0.0226 | 9.2 | -- | -- | -- | -- |
| 18.5 | 0.2 | 2.86 | -- | -- | 4.47 | -- | -- | 0.039 | -- | 59.46 | 20 | 6.18 | -- |
| 38.6 | 0.29 | 2.86 | -- | -- | -- | -- | -- | 0.0228 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.98 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 4 |
| 21 | 18.14 | humidity | 60 | 270 | < th | dose independent | rect. | 8 | 1 |
| 47 | 18.14 | humidity | 60 | 90 | < th | dose independent | rect. | 18 | 15 |
| 48 | 18.14 | humidity | 60 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 74 | 18.14 | humidity | 60 | 90 | < th | dose dependent | rect. | 18 | 15 |
| 75 | 18.15 | humidity | 60 | 30 | < th | dose independent | rect. | 9 | 1 |
| 122 | 18.15 | humidity | 60 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 268 | 18.17 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 309 | 18.25 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 4 |
| 329 | 18.34 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 1 |
| 368 | 18.58 | humidity | 60 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 372 | 18.66 | humidity | 60 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 374 | 18.69 | radiation | 40 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 400 | 18.75 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 611 | 20.56 | radiation | 40 | 10 | > th | dose dependent | sin | 12 | NA |
| 767 | 21.53 | wind | 1 | 10 | < th | dose independent | sin | 21 | NA |
| 788 | 21.82 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 1 |
| 807 | 21.82 | wind | 1 | 10 | < th | dose dependent | sin | 21 | NA |
| 873 | 22.53 | wind | 1 | 10 | > th | dose independent | sin | 21 | NA |