Os08g0274700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GINS complex, Psf3 component family protein.
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Os08g0274700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GINS complex, Psf3 component family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.13 | 0.274 | 11.3 | 0.535 | 0.93 | 0.414 | -0.594 | -1.21 | -0.141 | 20.1 | 81 | 843 | -- | -- |
| 36.02 | 0.28 | 11.3 | 0.439 | 0.966 | 0.391 | -0.069 | -- | -0.149 | 19.9 | 83 | 742 | -- | -- |
| 34.56 | 0.274 | 11.3 | 0.592 | 0.747 | 0.446 | -- | -1.69 | -0.129 | 19.9 | 81 | 1324 | -- | -- |
| 36.03 | 0.28 | 11.3 | 0.436 | 0.957 | 0.372 | -- | -- | -0.155 | 19.9 | 83 | 737 | -- | -- |
| 62.86 | 0.369 | 11.3 | 0.59 | -- | 0.595 | -- | -1.78 | -0.134 | -- | 81 | 1383 | -- | -- |
| 39.21 | 0.294 | 11.3 | 0.447 | 0.736 | -- | -0.116 | -- | -0.177 | 19.8 | -- | -- | -- | -- |
| 39.25 | 0.293 | 11.3 | 0.45 | 0.736 | -- | -- | -- | -0.177 | 19.8 | -- | -- | -- | -- |
| 65.46 | 0.377 | 11.3 | 0.451 | -- | 0.492 | -- | -- | -0.156 | -- | 80.83 | 1378 | -- | -- |
| 41.03 | 0.298 | 11.3 | -- | 0.945 | 0.399 | -- | -- | -0.203 | 20.1 | 83.25 | 773 | -- | -- |
| 68.55 | 0.387 | 11.3 | 0.441 | -- | -- | -- | -- | -0.187 | -- | -- | -- | -- | -- |
| 44.58 | 0.312 | 11.3 | -- | 0.733 | -- | -- | -- | -0.227 | 19.8 | -- | -- | -- | -- |
| 70.83 | 0.392 | 11.3 | -- | -- | 0.473 | -- | -- | -0.208 | -- | 80.13 | 1387 | -- | -- |
| 73.68 | 0.401 | 11.3 | -- | -- | -- | -- | -- | -0.236 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.47 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 10 |
| 2 | 32.79 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 4 | 32.86 | humidity | 90.0 | 30 | < th | dose independent | rect. | 12 | 21 |
| 5 | 33.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 4 |
| 6 | 33.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 7 | 33.03 | humidity | 90.0 | 30 | < th | dose independent | rect. | 14 | 19 |
| 8 | 33.06 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 9 | 33.08 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 11 | 33.14 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 13 | 33.15 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 15 | 33.15 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 16 | 33.15 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 18 | 33.15 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 19 | 33.15 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 20 | 33.15 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 21 | 33.15 | radiation | 1.0 | 90 | > th | dose independent | rect. | 18 | 14 |
| 22 | 33.15 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 28 | 33.20 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 29 | 33.21 | radiation | 10.0 | 10 | < th | dose dependent | sin | 11 | NA |
| 31 | 33.25 | radiation | 1.0 | 270 | > th | dose independent | rect. | 18 | 12 |
| 32 | 33.25 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 38 | 33.29 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 4 |
| 50 | 33.29 | radiation | 1.0 | 90 | < th | dose dependent | sin | 11 | NA |
| 51 | 33.31 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 52 | 33.31 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 11 |
| 53 | 33.33 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 66 | 33.34 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 86 | 33.41 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 89 | 33.44 | wind | 1.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 90 | 33.46 | radiation | 1.0 | 90 | < th | dose independent | sin | 11 | NA |
| 92 | 33.46 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 93 | 33.46 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 94 | 33.46 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 95 | 33.47 | radiation | 1.0 | 90 | > th | dose independent | sin | 11 | NA |
| 97 | 33.48 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 103 | 33.54 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 104 | 33.55 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 120 | 33.59 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 121 | 33.59 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 135 | 33.62 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 4 |
| 136 | 33.62 | humidity | 90.0 | 30 | < th | dose independent | rect. | 16 | 17 |
| 137 | 33.62 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 139 | 33.62 | wind | 9.0 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 140 | 33.62 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 141 | 33.63 | humidity | 80.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 149 | 33.64 | temperature | 15.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 151 | 33.65 | wind | 7.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 153 | 33.65 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 155 | 33.65 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 156 | 33.65 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 158 | 33.65 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 159 | 33.65 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 160 | 33.65 | humidity | 80.0 | 720 | < th | dose independent | rect. | 19 | 13 |
| 161 | 33.65 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 163 | 33.66 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 182 | 33.67 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 17 | 10 |
| 207 | 33.71 | temperature | 15.0 | 270 | > th | dose independent | rect. | 12 | 20 |
| 210 | 33.71 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 246 | 33.75 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 255 | 33.77 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 19 |
| 290 | 33.84 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 20 |
| 296 | 33.85 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 311 | 33.86 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 14 |
| 313 | 33.86 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 20 | 18 |
| 365 | 33.92 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 381 | 33.96 | humidity | 80.0 | 720 | < th | dose independent | rect. | 19 | 3 |
| 394 | 33.97 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 20 |
| 397 | 33.97 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 20 |
| 414 | 33.99 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 415 | 33.99 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 437 | 34.01 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 438 | 34.01 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 443 | 34.01 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 20 |
| 476 | 34.04 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 477 | 34.05 | humidity | 90.0 | 270 | < th | dose independent | rect. | 12 | 10 |
| 478 | 34.05 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 502 | 34.09 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 2 | 1 |
| 504 | 34.09 | humidity | 90.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 511 | 34.09 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 12 | 21 |
| 513 | 34.10 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 12 | 10 |
| 518 | 34.10 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 18 | 14 |
| 537 | 34.11 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 22 |
| 548 | 34.12 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 15 | 12 |
| 558 | 34.14 | temperature | 20.0 | 10 | > th | dose independent | rect. | 5 | 15 |
| 562 | 34.14 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 588 | 34.15 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 2 | 12 |
| 591 | 34.15 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 23 | 22 |
| 614 | 34.18 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 2 | 9 |
| 625 | 34.20 | radiation | 1.0 | 270 | < th | dose independent | rect. | 15 | 12 |
| 637 | 34.21 | humidity | 50.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 641 | 34.21 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 651 | 34.22 | temperature | 15.0 | 10 | > th | dose independent | rect. | 14 | 19 |
| 652 | 34.22 | humidity | 80.0 | 720 | < th | dose independent | rect. | 12 | 20 |
| 673 | 34.23 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 688 | 34.24 | wind | 7.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 691 | 34.24 | radiation | 1.0 | 90 | > th | dose independent | rect. | 14 | 19 |
| 721 | 34.27 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 14 | 22 |
| 727 | 34.28 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 18 |
| 741 | 34.29 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 14 |
| 750 | 34.29 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 753 | 34.29 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 807 | 34.32 | temperature | 20.0 | 720 | > th | dose independent | rect. | 11 | 4 |
| 811 | 34.32 | humidity | 90.0 | 720 | < th | dose independent | rect. | 10 | 14 |
| 813 | 34.32 | humidity | 80.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 864 | 34.35 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 12 | 3 |
| 869 | 34.36 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 905 | 34.38 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 951 | 34.40 | humidity | 70.0 | 720 | > th | dose dependent | no | NA | NA |
| 953 | 34.40 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 7 | 10 |
| 972 | 34.41 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 974 | 34.42 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 10 |
| 980 | 34.42 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 10 |
| 989 | 34.43 | temperature | 15.0 | 10 | > th | dose independent | rect. | 16 | 17 |