Os08g0272800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os08g0272800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.26 | 0.302 | 10.7 | 0.0975 | 1.46 | -0.664 | 0.474 | -1.33 | -0.307 | 18.3 | 1006 | 13428 | -- | -- |
| 42.5 | 0.304 | 10.7 | 0.182 | 1.45 | -0.858 | 0.464 | -- | -0.337 | 18.3 | 1005 | 12758 | -- | -- |
| 41.81 | 0.301 | 10.7 | 0.0946 | 1.46 | -0.661 | -- | -1.3 | -0.306 | 18.3 | 1005 | 13391 | -- | -- |
| 43.02 | 0.305 | 10.7 | 0.166 | 1.45 | -0.869 | -- | -- | -0.333 | 18.3 | 1005 | 12748 | -- | -- |
| 152 | 0.574 | 10.7 | 0.0474 | -- | -0.576 | -- | -1.5 | -0.325 | -- | 1006 | 14169 | -- | -- |
| 58.51 | 0.359 | 10.7 | 0.0269 | 1.45 | -- | 0.424 | -- | -0.215 | 18.3 | -- | -- | -- | -- |
| 58.95 | 0.36 | 10.7 | 0.0214 | 1.45 | -- | -- | -- | -0.213 | 18.4 | -- | -- | -- | -- |
| 152.83 | 0.576 | 10.7 | 0.12 | -- | -0.833 | -- | -- | -0.363 | -- | 1005 | 12631 | -- | -- |
| 43.72 | 0.308 | 10.7 | -- | 1.45 | -0.829 | -- | -- | -0.347 | 18.3 | 1005 | 12748 | -- | -- |
| 167.74 | 0.605 | 10.6 | -0.0165 | -- | -- | -- | -- | -0.244 | -- | -- | -- | -- | -- |
| 58.96 | 0.359 | 10.7 | -- | 1.45 | -- | -- | -- | -0.216 | 18.4 | -- | -- | -- | -- |
| 153.21 | 0.576 | 10.7 | -- | -- | -0.811 | -- | -- | -0.373 | -- | 1005 | 12633 | -- | -- |
| 167.75 | 0.605 | 10.6 | -- | -- | -- | -- | -- | -0.243 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.74 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 2 | 39.74 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 3 | 39.80 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 4 | 39.97 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 5 | 40.02 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 4 |
| 6 | 40.56 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 14 | 4 |
| 10 | 40.91 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 12 | 40.98 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 13 | 41.06 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 14 | 41.06 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 15 | 41.07 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 16 | 41.07 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 39 | 41.14 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 44 | 41.15 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 45 | 41.15 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 61 | 41.18 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 65 | 41.19 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 66 | 41.19 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 79 | 41.21 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 113 | 41.26 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 4 |
| 158 | 41.30 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 12 |
| 168 | 41.30 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 200 | 41.34 | atmosphere | 1005.0 | 14400 | < th | dose dependent | sin | 16 | NA |
| 283 | 41.46 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 18 | 3 |
| 481 | 41.78 | wind | 9.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 506 | 41.81 | atmosphere | 1005.0 | 14400 | < th | dose dependent | no | NA | NA |
| 526 | 41.83 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 1 | 23 |
| 537 | 41.84 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 21 | 23 |
| 548 | 41.85 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 18 | 23 |
| 598 | 41.93 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 19 | 18 |
| 710 | 42.08 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 12 | 6 |
| 740 | 42.13 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 9 | 9 |
| 764 | 42.17 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 804 | 42.21 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 7 | 18 |
| 854 | 42.26 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 19 | 18 |
| 873 | 42.28 | wind | 9.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 928 | 42.33 | wind | 7.0 | 14400 | < th | dose independent | rect. | 20 | 2 |