Os08g0272000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0272000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.81 | 0.293 | 9.38 | -0.379 | 0.162 | 1.08 | 0.439 | 1.03 | -0.31 | 15.1 | 24.2 | 361 | -- | -- |
| 40.06 | 0.295 | 9.37 | -0.258 | 0.142 | 0.934 | 0.248 | -- | -0.296 | 14.9 | 24.5 | 350 | -- | -- |
| 39.37 | 0.292 | 9.38 | -0.365 | 0.147 | 1.07 | -- | 0.968 | -0.307 | 15.2 | 24.14 | 400 | -- | -- |
| 40.19 | 0.295 | 9.36 | -0.214 | 0.178 | 0.962 | -- | -- | -0.277 | 14.7 | 24.4 | 309 | -- | -- |
| 40.29 | 0.296 | 9.38 | -0.367 | -- | 1.02 | -- | 0.96 | -0.311 | -- | 24.2 | 485 | -- | -- |
| 52.78 | 0.341 | 9.4 | -0.468 | 0.0937 | -- | 0.27 | -- | -0.453 | 13.2 | -- | -- | -- | -- |
| 53.08 | 0.341 | 9.4 | -0.459 | 0.0933 | -- | -- | -- | -0.452 | 13 | -- | -- | -- | -- |
| 41.48 | 0.3 | 9.36 | -0.231 | -- | 0.909 | -- | -- | -0.284 | -- | 24.4 | 439 | -- | -- |
| 41.32 | 0.299 | 9.36 | -- | 0.176 | 1.04 | -- | -- | -0.253 | 14.9 | 24.37 | 326 | -- | -- |
| 53.62 | 0.342 | 9.4 | -0.462 | -- | -- | -- | -- | -0.454 | -- | -- | -- | -- | -- |
| 58.63 | 0.358 | 9.39 | -- | 0.101 | -- | -- | -- | -0.401 | 13.2 | -- | -- | -- | -- |
| 42.74 | 0.305 | 9.35 | -- | -- | 1.01 | -- | -- | -0.246 | -- | 24.4 | 450 | -- | -- |
| 59.26 | 0.359 | 9.39 | -- | -- | -- | -- | -- | -0.402 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.59 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 8 |
| 28 | 39.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 8 |
| 29 | 39.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 11 |
| 52 | 39.10 | temperature | 25 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 129 | 39.28 | temperature | 25 | 1440 | < th | dose dependent | sin | 6 | NA |
| 150 | 39.31 | temperature | 30 | 1440 | < th | dose dependent | sin | 8 | NA |
| 160 | 39.33 | temperature | 15 | 1440 | > th | dose dependent | sin | 8 | NA |
| 173 | 39.35 | temperature | 25 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 217 | 39.43 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 21 |
| 265 | 39.53 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 266 | 39.53 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 301 | 39.57 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 16 |
| 350 | 39.65 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 353 | 39.65 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 393 | 39.72 | temperature | 15 | 720 | > th | dose dependent | sin | 12 | NA |
| 692 | 40.00 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 713 | 40.03 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 726 | 40.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 781 | 40.08 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 3 |
| 798 | 40.09 | temperature | 15 | 1440 | > th | dose dependent | rect. | 22 | 3 |
| 900 | 40.15 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 903 | 40.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 942 | 40.18 | temperature | 15 | 1440 | > th | dose dependent | rect. | 22 | 1 |