Os08g0270900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0270900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.84 | 0.537 | 9.16 | -0.0733 | 0.785 | -1.33 | 0.243 | -0.76 | -0.951 | 9.41 | 26.1 | 4725 | -- | -- |
| 131.13 | 0.533 | 9.15 | 0.0993 | 0.793 | -1.4 | 0.391 | -- | -0.933 | 9.24 | 26.1 | 4660 | -- | -- |
| 131.05 | 0.533 | 9.16 | -0.0699 | 0.78 | -1.33 | -- | -0.774 | -0.951 | 9.46 | 26.1 | 4742 | -- | -- |
| 131.19 | 0.533 | 9.14 | 0.115 | 0.78 | -1.41 | -- | -- | -0.919 | 9.48 | 26.15 | 4727 | -- | -- |
| 164.07 | 0.597 | 9.18 | 0.0109 | -- | -1.47 | -- | -0.558 | -0.933 | -- | 26.2 | 4985 | -- | -- |
| 198.61 | 0.661 | 9.14 | -0.359 | 0.868 | -- | 0.378 | -- | -0.931 | 9.4 | -- | -- | -- | -- |
| 199.12 | 0.661 | 9.14 | -0.345 | 0.866 | -- | -- | -- | -0.93 | 9.45 | -- | -- | -- | -- |
| 164.17 | 0.597 | 9.16 | 0.144 | -- | -1.53 | -- | -- | -0.915 | -- | 26.22 | 4984 | -- | -- |
| 131.52 | 0.534 | 9.14 | -- | 0.774 | -1.39 | -- | -- | -0.936 | 9.45 | 26.3 | 4742 | -- | -- |
| 243.14 | 0.729 | 9.17 | -0.35 | -- | -- | -- | -- | -0.927 | -- | -- | -- | -- | -- |
| 202.25 | 0.665 | 9.13 | -- | 0.866 | -- | -- | -- | -0.891 | 9.48 | -- | -- | -- | -- |
| 164.49 | 0.597 | 9.18 | -- | -- | -1.46 | -- | -- | -0.995 | -- | 27.31 | 4981 | -- | -- |
| 246.38 | 0.733 | 9.16 | -- | -- | -- | -- | -- | -0.888 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.15 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 11 | 126.36 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 20 | 127.89 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 29 | 128.51 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 47 | 128.62 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 48 | 128.75 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 49 | 128.79 | temperature | 30 | 4320 | < th | dose independent | rect. | 3 | 9 |
| 50 | 128.79 | temperature | 30 | 4320 | < th | dose independent | rect. | 1 | 11 |
| 53 | 128.81 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 17 |
| 60 | 128.85 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 65 | 129.09 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 15 |
| 72 | 129.36 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 85 | 129.50 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 104 | 129.59 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 128 | 129.76 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 130 | 129.80 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 134 | 129.95 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 139 | 130.07 | temperature | 25 | 4320 | > th | dose dependent | sin | 8 | NA |
| 159 | 130.11 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 161 | 130.12 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 177 | 130.32 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 189 | 130.55 | temperature | 15 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 216 | 130.74 | temperature | 30 | 4320 | > th | dose independent | sin | 7 | NA |
| 261 | 131.00 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 8 |
| 279 | 131.01 | temperature | 30 | 4320 | < th | dose independent | sin | 7 | NA |
| 290 | 131.09 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 12 |
| 292 | 131.09 | temperature | 30 | 4320 | < th | dose independent | rect. | 1 | 15 |
| 297 | 131.10 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 21 |
| 298 | 131.11 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 8 |
| 300 | 131.11 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 17 |
| 301 | 131.11 | temperature | 30 | 4320 | < th | dose independent | rect. | 21 | 19 |
| 334 | 131.35 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 676 | 132.51 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 22 |
| 677 | 132.51 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 678 | 132.52 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 771 | 132.53 | temperature | 30 | 4320 | < th | dose independent | rect. | 3 | 18 |
| 773 | 132.53 | temperature | 30 | 4320 | < th | dose independent | rect. | 1 | 20 |
| 796 | 132.55 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 798 | 132.55 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 13 |
| 819 | 132.55 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 22 |
| 879 | 132.58 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 881 | 132.59 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 10 |
| 882 | 132.59 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 937 | 132.74 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 16 |
| 990 | 132.87 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 23 |