Os08g0270400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os08g0270400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 256.86 | 0.753 | 11.5 | 0.692 | 3.27 | -1.93 | 1.82 | -1.25 | -0.319 | 7.89 | 20.2 | 1417 | -- | -- |
| 259.55 | 0.75 | 11.5 | 0.861 | 3.26 | -1.68 | 1.87 | -- | -0.294 | 7.88 | 20.39 | 1370 | -- | -- |
| 266.34 | 0.76 | 11.5 | 0.75 | 3.28 | -1.93 | -- | -1.21 | -0.312 | 7.83 | 20.3 | 1390 | -- | -- |
| 269.2 | 0.764 | 11.5 | 0.906 | 3.28 | -1.72 | -- | -- | -0.286 | 7.84 | 20.36 | 1396 | -- | -- |
| 769.49 | 1.29 | 11.5 | 0.697 | -- | -2 | -- | -1.06 | -0.119 | -- | 21.4 | 714 | -- | -- |
| 321.24 | 0.84 | 11.5 | 0.183 | 3.26 | -- | 2.05 | -- | -0.648 | 7.95 | -- | -- | -- | -- |
| 333.58 | 0.855 | 11.5 | 0.238 | 3.27 | -- | -- | -- | -0.651 | 7.91 | -- | -- | -- | -- |
| 774.04 | 1.3 | 11.5 | 0.943 | -- | -1.91 | -- | -- | -0.0873 | -- | 21.3 | 685 | -- | -- |
| 288.29 | 0.791 | 11.5 | -- | 3.27 | -1.29 | -- | -- | -0.435 | 7.81 | 20.7 | 1321 | -- | -- |
| 914.01 | 1.41 | 11.6 | 0.273 | -- | -- | -- | -- | -0.607 | -- | -- | -- | -- | -- |
| 335.07 | 0.856 | 11.5 | -- | 3.27 | -- | -- | -- | -0.677 | 7.91 | -- | -- | -- | -- |
| 684.41 | 1.22 | 11.5 | -- | -- | -2.02 | -- | -- | -0.0914 | -- | 26 | 517 | -- | -- |
| 915.97 | 1.41 | 11.6 | -- | -- | -- | -- | -- | -0.638 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 252.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 4 | 253.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 5 | 253.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 6 | 253.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 7 | 253.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 14 |
| 16 | 254.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 24 | 254.30 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 27 | 254.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 14 |
| 63 | 255.02 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 145 | 256.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 149 | 256.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 176 | 256.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 182 | 256.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 253 | 257.25 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 308 | 257.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 352 | 258.19 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 387 | 258.57 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 394 | 258.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 399 | 258.64 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 404 | 258.69 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 413 | 258.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 424 | 258.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 435 | 259.08 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 448 | 259.22 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 488 | 259.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 539 | 260.64 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 573 | 261.09 | wind | 9 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 621 | 262.17 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 624 | 262.19 | humidity | 80 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 646 | 262.69 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 648 | 262.70 | wind | 3 | 14400 | < th | dose independent | rect. | 23 | 5 |
| 662 | 262.95 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 697 | 263.50 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 698 | 263.50 | wind | 3 | 14400 | > th | dose independent | rect. | 23 | 5 |
| 719 | 263.96 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 736 | 264.27 | wind | 9 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 748 | 264.51 | humidity | 90 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 782 | 265.13 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 837 | 265.98 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 864 | 266.32 | wind | 5 | 43200 | < th | dose dependent | rect. | 23 | 4 |
| 890 | 266.71 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 5 |
| 929 | 267.19 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 941 | 267.33 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 954 | 267.48 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 975 | 267.74 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 1000 | 268.04 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 3 |