Os08g0269800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, cysteine-containing containing protein.
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Os08g0269800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, cysteine-containing containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.5 | 0.223 | 11.9 | -0.227 | 0.953 | -2.93 | -0.478 | 9.38 | -0.123 | 9.26 | 0.4998 | 184 | -- | -- |
| 24.34 | 0.23 | 11.9 | -0.308 | 0.946 | -0.593 | -0.411 | -- | -0.111 | 9.23 | 1.644 | 175 | -- | -- |
| 23.29 | 0.225 | 11.9 | -0.245 | 0.952 | -2.81 | -- | 9.25 | -0.122 | 9.26 | 0.5 | 180 | -- | -- |
| 24.99 | 0.233 | 11.9 | -0.313 | 0.94 | -0.549 | -- | -- | -0.105 | 9.24 | 1.637 | 173 | -- | -- |
| 74.76 | 0.403 | 11.9 | -0.215 | -- | -3.25 | -- | 9.64 | -0.107 | -- | 1.216 | 177 | -- | -- |
| 25.02 | 0.234 | 11.9 | -0.325 | 0.941 | -- | -0.388 | -- | -0.104 | 9.26 | -- | -- | -- | -- |
| 25.55 | 0.237 | 11.9 | -0.339 | 0.942 | -- | -- | -- | -0.104 | 9.25 | -- | -- | -- | -- |
| 74.18 | 0.401 | 11.9 | -0.324 | -- | -0.895 | -- | -- | -0.106 | -- | 1.553 | 365 | -- | -- |
| 27.8 | 0.246 | 11.9 | -- | 0.928 | -0.634 | -- | -- | -0.074 | 9.27 | 1.621 | 175 | -- | -- |
| 77.19 | 0.411 | 11.9 | -0.343 | -- | -- | -- | -- | -0.1 | -- | -- | -- | -- | -- |
| 28.59 | 0.25 | 11.9 | -- | 0.942 | -- | -- | -- | -0.0665 | 9.28 | -- | -- | -- | -- |
| 76.65 | 0.408 | 11.9 | -- | -- | -0.801 | -- | -- | -0.0805 | -- | 1.485 | 391 | -- | -- |
| 80.29 | 0.418 | 11.9 | -- | -- | -- | -- | -- | -0.062 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.71 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 19 |
| 2 | 22.72 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 19 |
| 8 | 22.80 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 10 | 22.82 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 3 | 15 |
| 14 | 22.82 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 22 | 20 |
| 24 | 22.86 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 7 | 21 |
| 54 | 22.93 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 64 | 22.95 | wind | 7.0 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 65 | 22.95 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 16 | 19 |
| 91 | 22.97 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 101 | 22.98 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 103 | 22.99 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 16 | 19 |
| 136 | 23.02 | precipitation | 0.1 | 270 | > th | dose dependent | sin | 1 | NA |
| 145 | 23.03 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 15 |
| 151 | 23.04 | precipitation | 0.1 | 90 | > th | dose independent | sin | 2 | NA |
| 155 | 23.05 | wind | 7.0 | 270 | > th | dose independent | rect. | 1 | 7 |
| 156 | 23.05 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 3 | 8 |
| 164 | 23.05 | precipitation | 0.1 | 270 | > th | dose dependent | no | NA | NA |
| 177 | 23.06 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 3 | 8 |
| 186 | 23.07 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 22 | 13 |
| 200 | 23.07 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 201 | 23.08 | precipitation | 0.1 | 270 | > th | dose independent | no | NA | NA |
| 202 | 23.08 | precipitation | 0.1 | 270 | < th | dose independent | no | NA | NA |
| 210 | 23.08 | precipitation | 0.1 | 270 | < th | dose dependent | no | NA | NA |
| 211 | 23.08 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 22 | 13 |
| 218 | 23.10 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 9 | 23 |
| 224 | 23.11 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 5 | 8 |
| 245 | 23.12 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 249 | 23.13 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 2 | 2 |
| 250 | 23.13 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 6 |
| 252 | 23.13 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 6 | 7 |
| 256 | 23.14 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 268 | 23.15 | precipitation | 0.1 | 270 | > th | dose independent | sin | 0 | NA |
| 276 | 23.15 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 2 | 2 |
| 303 | 23.17 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 321 | 23.18 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 17 | 14 |
| 328 | 23.19 | radiation | 1.0 | 90 | > th | dose independent | rect. | 17 | 14 |
| 344 | 23.19 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 19 | 8 |
| 354 | 23.20 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 387 | 23.23 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 400 | 23.24 | radiation | 10.0 | 90 | < th | dose independent | rect. | 5 | 17 |
| 413 | 23.26 | precipitation | 0.1 | 270 | < th | dose independent | sin | 5 | NA |
| 414 | 23.26 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 6 | 2 |
| 416 | 23.26 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 417 | 23.26 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 424 | 23.26 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 20 |
| 430 | 23.26 | precipitation | 0.1 | 270 | < th | dose dependent | sin | 5 | NA |
| 431 | 23.26 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 6 | 2 |
| 440 | 23.27 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 5 | 16 |
| 480 | 23.29 | humidity | 80.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 481 | 23.29 | humidity | 90.0 | 10 | < th | dose independent | rect. | 24 | 22 |
| 495 | 23.30 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 5 | 14 |
| 526 | 23.32 | wind | 3.0 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 536 | 23.33 | wind | 3.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 538 | 23.33 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 22 | 15 |
| 542 | 23.33 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 549 | 23.34 | humidity | 80.0 | 1440 | < th | dose independent | sin | 7 | NA |
| 556 | 23.34 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 7 | 14 |
| 562 | 23.34 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 6 | 7 |
| 563 | 23.34 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 6 | 9 |
| 570 | 23.35 | humidity | 90.0 | 720 | > th | dose independent | rect. | 9 | 1 |
| 571 | 23.35 | wind | 7.0 | 1440 | < th | dose independent | rect. | 18 | 7 |
| 574 | 23.35 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 7 | 12 |
| 576 | 23.35 | wind | 9.0 | 720 | > th | dose independent | rect. | 19 | 15 |
| 580 | 23.35 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 599 | 23.36 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 6 | 5 |
| 607 | 23.36 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 18 |
| 631 | 23.37 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 645 | 23.38 | wind | 1.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 657 | 23.38 | precipitation | 0.1 | 90 | > th | dose dependent | sin | 9 | NA |
| 658 | 23.38 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 660 | 23.38 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 21 | 11 |
| 671 | 23.39 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 676 | 23.39 | radiation | 1.0 | 720 | < th | dose independent | rect. | 6 | 7 |
| 678 | 23.39 | radiation | 1.0 | 720 | < th | dose independent | rect. | 6 | 9 |
| 698 | 23.39 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 699 | 23.39 | wind | 7.0 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 721 | 23.40 | radiation | 1.0 | 720 | < th | dose independent | rect. | 6 | 5 |
| 747 | 23.40 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 7 | 14 |
| 750 | 23.41 | radiation | 1.0 | 720 | < th | dose independent | rect. | 6 | 1 |
| 765 | 23.41 | temperature | 15.0 | 90 | > th | dose independent | rect. | 4 | 18 |
| 809 | 23.42 | wind | 9.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 824 | 23.43 | wind | 3.0 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 834 | 23.43 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 848 | 23.43 | wind | 9.0 | 10 | < th | dose dependent | rect. | 4 | 18 |
| 858 | 23.44 | humidity | 90.0 | 720 | > th | dose independent | rect. | 9 | 4 |
| 867 | 23.44 | atmosphere | 1005.0 | 10 | < th | dose dependent | sin | 9 | NA |
| 874 | 23.44 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 9 | 4 |
| 907 | 23.45 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 1 | 12 |
| 916 | 23.45 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 940 | 23.46 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 965 | 23.46 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 10 | 3 |
| 969 | 23.46 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 21 | 9 |
| 996 | 23.47 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 1 | 6 |
| 997 | 23.47 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 4 | 9 |