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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0269600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : EGF-like region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.99 (0.0486) R2 : 0.755
β1 : -2.08 (0.18) R2dD : 0.0772 R2D : 0.0439
β2 : 4.32 (0.122) R2dC : 0.693 R2C : 0.646
β3 : 1.26 (0.186) R2dE : 0.0256 R2E : -0.0191
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.71 (0.104) R2dN8 : 0.0345 R2N8 : 0.00736
σ : 0.907
deviance : 379.43
__
_____
C
peak time of C : 8.84
E
wheather : humidity
threshold : 81.24
memory length : 1257
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
378.54 0.914 5.98 -2.03 4.3 1.18 0.273 0.794 -0.704 8.84 81.08 1285 -- --
379.29 0.907 5.99 -2.07 4.32 1.25 0.247 -- -0.714 8.84 81.31 1259 -- --
378.66 0.906 5.98 -2.03 4.31 1.18 -- 0.757 -0.708 8.85 81 1257 -- --
379.43 0.907 5.99 -2.08 4.32 1.26 -- -- -0.71 8.84 81.24 1257 -- --
1394.73 1.75 6.1 -1.89 -- 1.16 -- 0.35 -0.691 -- 87.69 1460 -- --
415.15 0.955 6 -1.89 4.24 -- 0.0537 -- -0.758 8.68 -- -- -- --
415.16 0.954 6 -1.89 4.24 -- -- -- -0.758 8.68 -- -- -- --
1394.53 1.75 6.1 -1.9 -- 1.18 -- -- -0.68 -- 86.16 1456 -- --
452.24 0.99 6 -- 4.24 2.03 -- -- -0.673 8.72 91.77 47520 -- --
1432.64 1.77 6.11 -1.88 -- -- -- -- -0.722 -- -- -- -- --
508.97 1.06 5.95 -- 4.24 -- -- -- -0.547 8.71 -- -- -- --
1467.76 1.78 6.06 -- -- 1.78 -- -- -0.501 -- 83 47520 -- --
1525.54 1.82 6.06 -- -- -- -- -- -0.514 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 374.13 humidity 80.0 720 < th dose independent rect. 19 1
2 376.04 temperature 20.0 720 > th dose dependent rect. 4 1
3 376.06 temperature 20.0 10 > th dose independent rect. 24 4
5 376.30 temperature 20.0 720 > th dose dependent rect. 3 3
6 376.40 temperature 20.0 270 > th dose independent rect. 22 4
11 377.40 humidity 60.0 720 > th dose independent rect. 15 1
13 377.62 temperature 20.0 270 > th dose dependent rect. 3 6
17 378.10 radiation 10.0 1440 > th dose dependent rect. 12 1
19 378.17 humidity 70.0 1440 > th dose independent rect. 12 17
22 378.18 humidity 70.0 1440 > th dose independent rect. 12 8
24 378.20 humidity 70.0 1440 > th dose independent rect. 12 10
27 378.23 humidity 70.0 1440 > th dose independent rect. 12 12
33 378.38 temperature 25.0 10 > th dose independent rect. 5 6
37 378.61 humidity 70.0 1440 < th dose independent rect. 12 8
57 378.84 humidity 70.0 1440 > th dose independent sin 15 NA
67 378.91 humidity 50.0 1440 > th dose dependent rect. 12 1
76 379.15 humidity 70.0 1440 < th dose independent rect. 14 4
78 379.19 radiation 40.0 1440 > th dose independent rect. 12 1
80 379.25 humidity 50.0 720 > th dose dependent rect. 15 12
81 379.26 humidity 70.0 1440 < th dose independent rect. 16 1
118 379.68 wind 1.0 90 < th dose independent rect. 24 3
140 380.06 radiation 20.0 1440 > th dose independent rect. 12 1
153 380.07 humidity 90.0 1440 < th dose dependent rect. 12 1
155 380.16 humidity 70.0 1440 < th dose independent sin 16 NA
174 380.27 humidity 80.0 1440 < th dose dependent rect. 15 1
194 380.67 humidity 70.0 720 > th dose independent rect. 17 10
204 380.80 radiation 40.0 1440 < th dose dependent rect. 12 1
205 380.83 wind 1.0 30 < th dose independent rect. 2 3
206 380.84 humidity 80.0 1440 < th dose dependent rect. 12 12
213 380.94 radiation 10.0 1440 > th dose independent rect. 12 19
218 380.96 humidity 80.0 1440 < th dose dependent rect. 12 9
219 380.97 humidity 80.0 1440 < th dose dependent rect. 12 20
222 380.99 radiation 20.0 1440 > th dose independent rect. 12 4
231 381.08 humidity 50.0 720 > th dose independent rect. 14 13
235 381.15 radiation 40.0 1440 < th dose independent rect. 12 1
247 381.26 humidity 90.0 1440 < th dose dependent rect. 12 4
256 381.33 wind 9.0 4320 > th dose dependent rect. 13 1
264 381.52 humidity 50.0 1440 > th dose dependent rect. 12 4
267 381.54 radiation 10.0 1440 > th dose independent sin 15 NA
274 381.61 humidity 80.0 720 < th dose dependent rect. 19 1
326 382.04 humidity 80.0 1440 < th dose dependent sin 17 NA
338 382.13 temperature 30.0 720 < th dose independent rect. 13 2
364 382.33 atmosphere 1000.0 90 > th dose independent rect. 24 3
378 382.40 humidity 50.0 720 > th dose independent rect. 7 20
403 382.51 wind 3.0 90 < th dose dependent rect. 24 3
416 382.59 temperature 30.0 720 < th dose independent rect. 15 1
449 382.65 atmosphere 1000.0 270 > th dose independent rect. 22 4
504 382.77 humidity 50.0 720 > th dose dependent rect. 6 20
510 382.82 humidity 50.0 1440 > th dose dependent rect. 15 1
511 382.83 humidity 50.0 720 > th dose independent rect. 24 17
524 382.97 temperature 25.0 10 > th dose independent rect. 1 10
528 382.99 precipitation 0.1 720 < th dose independent rect. 1 23
530 382.99 precipitation 0.1 720 < th dose dependent rect. 1 23
552 383.07 humidity 80.0 1440 < th dose dependent rect. 18 22
554 383.10 humidity 80.0 90 > th dose dependent rect. 1 2
593 383.27 humidity 50.0 270 > th dose independent rect. 7 10
614 383.34 temperature 30.0 720 < th dose independent rect. 15 12
684 383.65 humidity 80.0 1440 < th dose dependent rect. 7 17
698 383.69 temperature 10.0 10 > th dose dependent rect. 4 20
700 383.70 humidity 90.0 720 > th dose dependent rect. 20 6
708 383.72 radiation 10.0 1440 > th dose independent rect. 8 10
748 383.74 humidity 50.0 720 > th dose dependent rect. 15 4
758 383.76 radiation 10.0 1440 > th dose independent no NA NA
759 383.76 radiation 10.0 1440 > th dose independent rect. 6 12
837 383.76 temperature 15.0 270 > th dose dependent rect. 22 4
862 383.79 humidity 80.0 1440 < th dose dependent rect. 22 23
871 383.81 humidity 80.0 1440 < th dose dependent no NA NA
875 383.82 humidity 70.0 1440 < th dose independent rect. 12 1
881 383.83 radiation 10.0 1440 > th dose dependent rect. 12 4
910 383.89 temperature 25.0 30 < th dose independent rect. 24 16
939 383.94 radiation 40.0 1440 < th dose dependent rect. 12 4
940 383.95 humidity 70.0 1440 < th dose independent no NA NA