Os08g0268900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os08g0268900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.58 | 0.369 | 9.75 | 0.181 | 0.952 | 0.842 | -0.0443 | 1.34 | 0.0647 | 15 | 20.4 | 1348 | -- | -- |
| 65.44 | 0.377 | 9.77 | 0.0279 | 0.944 | 0.634 | -0.262 | -- | 0.0497 | 14.8 | 21.4 | 2550 | -- | -- |
| 61.09 | 0.364 | 9.75 | 0.218 | 0.956 | 0.791 | -- | 1.33 | 0.0613 | 15 | 20.7 | 1295 | -- | -- |
| 64.59 | 0.374 | 9.8 | -0.0881 | 0.966 | 0.608 | -- | -- | -0.0211 | 15 | 21.3 | 2530 | -- | -- |
| 106.1 | 0.482 | 9.78 | 0.112 | -- | 0.572 | -- | 0.273 | 0.0321 | -- | 20.96 | 1719 | -- | -- |
| 74.61 | 0.405 | 9.76 | 0.217 | 0.921 | -- | -0.0723 | -- | 0.162 | 15 | -- | -- | -- | -- |
| 74.63 | 0.405 | 9.76 | 0.216 | 0.921 | -- | -- | -- | 0.162 | 15 | -- | -- | -- | -- |
| 106.4 | 0.483 | 9.79 | 0.0347 | -- | 0.555 | -- | -- | 0.0109 | -- | 21.3 | 2530 | -- | -- |
| 64.77 | 0.375 | 9.79 | -- | 0.959 | 0.578 | -- | -- | -0.00699 | 15 | 21.3 | 2530 | -- | -- |
| 123.22 | 0.519 | 9.76 | 0.176 | -- | -- | -- | -- | 0.138 | -- | -- | -- | -- | -- |
| 75.85 | 0.407 | 9.76 | -- | 0.917 | -- | -- | -- | 0.138 | 15 | -- | -- | -- | -- |
| 97.03 | 0.46 | 9.82 | -- | -- | 0.534 | -- | -- | -0.14 | -- | 24.9 | 1738 | -- | -- |
| 124.04 | 0.52 | 9.76 | -- | -- | -- | -- | -- | 0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.93 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 2 | 54.18 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 81 | 57.84 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 86 | 57.93 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 21 |
| 93 | 58.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 94 | 58.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 102 | 58.17 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 117 | 58.40 | temperature | 30 | 90 | < th | dose dependent | sin | 6 | NA |
| 148 | 58.76 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 170 | 59.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 185 | 59.26 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 221 | 59.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 14 |
| 253 | 59.89 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 294 | 60.14 | temperature | 10 | 90 | > th | dose dependent | sin | 6 | NA |
| 302 | 60.23 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 21 |
| 312 | 60.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 18 |
| 323 | 60.36 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 15 |
| 330 | 60.38 | temperature | 25 | 270 | < th | dose independent | sin | 8 | NA |
| 374 | 60.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 401 | 60.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 406 | 60.81 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 419 | 60.86 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 422 | 60.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 428 | 60.91 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 15 |
| 448 | 61.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 456 | 61.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 500 | 61.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 8 |
| 518 | 61.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 521 | 61.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 562 | 61.53 | temperature | 25 | 270 | > th | dose dependent | sin | 9 | NA |
| 569 | 61.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 7 |
| 574 | 61.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 5 |
| 583 | 61.58 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 593 | 61.61 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 10 |
| 603 | 61.62 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 22 |
| 611 | 61.64 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 10 |
| 619 | 61.65 | temperature | 25 | 270 | > th | dose independent | rect. | 16 | 21 |
| 630 | 61.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 640 | 61.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 6 |
| 645 | 61.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 4 |
| 654 | 61.72 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 701 | 61.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 715 | 61.81 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 720 | 61.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 748 | 61.87 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 20 |
| 753 | 61.88 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 776 | 61.90 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 817 | 61.97 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 881 | 62.06 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 889 | 62.08 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 911 | 62.11 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |