Os08g0267300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os08g0267300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 153.33 | 0.582 | 2.99 | -0.747 | 0.0786 | 5.71 | 0.0392 | -14.2 | 0.0531 | 0.545 | 49.62 | 4103 | -- | -- |
| 164.28 | 0.602 | 2.75 | -0.0165 | 0.143 | -0.15 | -0.164 | -- | -0.0201 | 1.16 | 49.62 | 4103 | -- | -- |
| 153.24 | 0.577 | 3 | -0.757 | 0.0856 | 6.3 | -- | -15.7 | 0.0433 | 1.03 | 49.35 | 3997 | -- | -- |
| 163.53 | 0.596 | 2.75 | -0.0126 | 0.148 | -0.233 | -- | -- | -0.0349 | 1.15 | 48.87 | 12692 | -- | -- |
| 153.65 | 0.577 | 3 | -0.76 | -- | 6.31 | -- | -15.7 | 0.0483 | -- | 49.4 | 3997 | -- | -- |
| 164.35 | 0.601 | 2.75 | -0.0227 | 0.147 | -- | -0.139 | -- | -0.0192 | 1.09 | -- | -- | -- | -- |
| 164.42 | 0.6 | 2.75 | -0.0175 | 0.147 | -- | -- | -- | -0.0182 | 0.748 | -- | -- | -- | -- |
| 164.85 | 0.598 | 2.75 | -0.00736 | -- | -0.24 | -- | -- | -0.0341 | -- | 48.39 | 12754 | -- | -- |
| 163.52 | 0.596 | 2.75 | -- | 0.148 | -0.233 | -- | -- | -0.036 | 0.716 | 49 | 12686 | -- | -- |
| 165.77 | 0.602 | 2.74 | -0.0122 | -- | -- | -- | -- | -0.0155 | -- | -- | -- | -- | -- |
| 164.43 | 0.6 | 2.75 | -- | 0.147 | -- | -- | -- | -0.0162 | 0.742 | -- | -- | -- | -- |
| 164.85 | 0.598 | 2.75 | -- | -- | -0.244 | -- | -- | -0.034 | -- | 48.34 | 12754 | -- | -- |
| 165.78 | 0.601 | 2.74 | -- | -- | -- | -- | -- | -0.0142 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.54 | humidity | 50 | 4320 | > th | dose independent | rect. | 17 | 10 |
| 5 | 152.72 | humidity | 50 | 4320 | < th | dose independent | rect. | 16 | 18 |
| 6 | 152.73 | humidity | 50 | 4320 | < th | dose dependent | rect. | 16 | 18 |
| 7 | 152.74 | humidity | 50 | 4320 | > th | dose independent | rect. | 17 | 17 |
| 9 | 152.74 | humidity | 50 | 4320 | < th | dose dependent | rect. | 16 | 2 |
| 25 | 152.75 | humidity | 50 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 58 | 152.78 | humidity | 50 | 4320 | > th | dose independent | rect. | 17 | 12 |
| 77 | 152.82 | humidity | 50 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 90 | 153.38 | humidity | 50 | 4320 | < th | dose dependent | rect. | 14 | 4 |
| 147 | 153.65 | humidity | 50 | 4320 | < th | dose dependent | sin | 18 | NA |
| 154 | 153.71 | humidity | 50 | 4320 | < th | dose dependent | no | NA | NA |
| 340 | 154.32 | humidity | 60 | 1440 | > th | dose independent | rect. | 19 | 8 |
| 343 | 154.40 | humidity | 50 | 4320 | < th | dose dependent | rect. | 16 | 23 |
| 366 | 154.69 | humidity | 50 | 4320 | < th | dose independent | rect. | 17 | 23 |
| 379 | 154.83 | humidity | 50 | 720 | < th | dose dependent | rect. | 17 | 20 |
| 533 | 155.15 | humidity | 50 | 720 | < th | dose independent | rect. | 17 | 20 |
| 534 | 155.16 | humidity | 50 | 4320 | < th | dose independent | sin | 11 | NA |
| 556 | 155.36 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 1 |
| 570 | 155.45 | humidity | 50 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 618 | 155.64 | humidity | 70 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 630 | 155.73 | humidity | 50 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 649 | 155.76 | humidity | 50 | 720 | < th | dose independent | sin | 11 | NA |
| 650 | 155.76 | humidity | 50 | 720 | < th | dose dependent | sin | 3 | NA |
| 667 | 155.77 | humidity | 50 | 720 | < th | dose dependent | rect. | 14 | 22 |
| 690 | 155.79 | humidity | 50 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 692 | 155.80 | humidity | 50 | 720 | < th | dose dependent | rect. | 14 | 4 |
| 712 | 155.82 | humidity | 50 | 720 | < th | dose dependent | sin | 11 | NA |
| 723 | 155.87 | humidity | 50 | 720 | < th | dose dependent | no | NA | NA |
| 726 | 155.87 | humidity | 50 | 720 | < th | dose dependent | rect. | 11 | 7 |