Os08g0266400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
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Os08g0266400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine rich repeat, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 220.14 | 0.697 | 4.3 | 0.73 | 0.0367 | -1.72 | 1.78 | 2.92 | 0.661 | 22.9 | 26.9 | 2414 | -- | -- |
| 224.9 | 0.698 | 4.4 | -0.132 | 0.0244 | -1.5 | 1.89 | -- | 0.457 | 23.1 | 26.61 | 2395 | -- | -- |
| 233.09 | 0.711 | 4.29 | 0.796 | 0.0487 | -1.78 | -- | 3.43 | 0.69 | 22.4 | 26.9 | 2382 | -- | -- |
| 238.86 | 0.72 | 4.4 | -0.174 | 0.287 | -1.45 | -- | -- | 0.467 | 17.7 | 26.4 | 2232 | -- | -- |
| 233.18 | 0.711 | 4.28 | 0.868 | -- | -1.76 | -- | 3.68 | 0.713 | -- | 26.86 | 2398 | -- | -- |
| 300.01 | 0.812 | 4.47 | -0.663 | 0.288 | -- | -1.7 | -- | 0.0943 | 11.6 | -- | -- | -- | -- |
| 311.72 | 0.827 | 4.48 | -0.728 | 0.317 | -- | -- | -- | 0.0902 | 13.1 | -- | -- | -- | -- |
| 240.73 | 0.723 | 4.41 | -0.22 | -- | -1.44 | -- | -- | 0.421 | -- | 26.67 | 2430 | -- | -- |
| 238.89 | 0.72 | 4.4 | -- | 0.346 | -1.48 | -- | -- | 0.484 | 16.9 | 26.62 | 2080 | -- | -- |
| 317.96 | 0.833 | 4.48 | -0.74 | -- | -- | -- | -- | 0.0839 | -- | -- | -- | -- | -- |
| 325.7 | 0.844 | 4.46 | -- | 0.329 | -- | -- | -- | 0.171 | 13.2 | -- | -- | -- | -- |
| 241.88 | 0.724 | 4.4 | -- | -- | -1.5 | -- | -- | 0.456 | -- | 26.65 | 2416 | -- | -- |
| 332.41 | 0.851 | 4.46 | -- | -- | -- | -- | -- | 0.166 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 224.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 8 | 225.95 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 12 | 226.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 40 | 227.66 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 43 | 227.68 | temperature | 25 | 1440 | > th | dose dependent | sin | 4 | NA |
| 45 | 227.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 17 |
| 46 | 227.74 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 48 | 227.76 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 59 | 228.07 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 66 | 228.37 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 91 | 228.60 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 100 | 228.67 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 15 |
| 110 | 228.88 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 114 | 228.89 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 10 |
| 116 | 228.91 | temperature | 20 | 720 | > th | dose dependent | sin | 18 | NA |
| 123 | 228.98 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 133 | 229.08 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 148 | 229.19 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 154 | 229.21 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 17 |
| 160 | 229.27 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 169 | 229.34 | radiation | 1 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 182 | 229.36 | humidity | 50 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 188 | 229.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 19 |
| 251 | 229.77 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 305 | 230.06 | temperature | 30 | 720 | < th | dose dependent | sin | 21 | NA |
| 436 | 230.47 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 542 | 230.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 574 | 230.76 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 584 | 230.77 | humidity | 50 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 601 | 230.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 16 |
| 616 | 230.82 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 683 | 230.97 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 695 | 231.00 | temperature | 10 | 720 | > th | dose dependent | sin | 19 | NA |
| 697 | 231.00 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 724 | 231.05 | temperature | 15 | 4320 | > th | dose dependent | sin | 18 | NA |
| 903 | 231.58 | radiation | 30 | 4320 | < th | dose dependent | rect. | 18 | 9 |
| 968 | 231.75 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 972 | 231.76 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 15 |
| 993 | 231.82 | radiation | 20 | 4320 | < th | dose dependent | rect. | 18 | 5 |