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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0265000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.35 (0.0517) R2 : 0.0544
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.557 (0.109) R2dN8 : 0.0702 R2N8 : 0.0544
σ : 0.974
deviance : 435.34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
395.32 0.934 3.32 0.339 0.505 -0.449 4.84 -4.53 -0.491 2.12 1000 30 21 9.99
417.38 0.959 3.34 0.23 0.899 -0.7 -0.702 -- -0.505 3.16 1000 30 21 9.99
409.09 0.949 3.33 0.229 0.852 -0.67 -- -1.23 -0.505 3.17 1000 30 21 9.99
417.79 0.952 3.34 0.23 0.905 -0.718 -- -- -0.487 2.84 1000 24 20.8 10.1
420.18 0.96 3.34 0.272 -- -0.148 -- -1.27 -0.518 -- 1000 30 21 9.99
431.12 0.973 3.34 0.292 0.125 -- -0.693 -- -0.531 5.46 -- -- -- --
432.15 0.973 3.34 0.291 0.132 -- -- -- -0.527 6.99 -- -- -- --
422.32 0.957 3.32 0.174 -- -0.732 -- -- -0.465 -- 1000 1451 20.1 10.8
416.67 0.951 3.35 -- 1.02 -0.811 -- -- -0.51 2.41 1001 16 19.8 11.1
433.07 0.972 3.34 0.294 -- -- -- -- -0.525 -- -- -- -- --
434.38 0.975 3.35 -- 0.136 -- -- -- -0.56 6.86 -- -- -- --
418.97 0.953 3.31 -- -- -0.895 -- -- -0.453 -- 1000 1487 19.8 4.27
435.34 0.974 3.35 -- -- -- -- -- -0.557 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 395.34 atmosphere 1000 30 > th dose independent rect. 21 10
11 399.51 atmosphere 1000 90 > th dose independent rect. 9 21
12 400.17 atmosphere 1000 270 > th dose independent rect. 17 11
13 400.28 radiation 10 90 > th dose independent rect. 6 2
26 400.38 atmosphere 1000 10 < th dose independent rect. 15 18
32 400.56 humidity 90 90 > th dose independent rect. 14 1
35 400.56 humidity 90 90 > th dose dependent rect. 14 1
40 400.72 radiation 1 10 < th dose independent rect. 15 1
54 401.10 atmosphere 1000 30 > th dose independent rect. 8 23
63 401.16 radiation 1 10 < th dose independent rect. 11 5
137 403.01 radiation 1 90 > th dose dependent rect. 18 14
141 403.17 radiation 1 90 > th dose dependent rect. 7 1
145 403.23 radiation 1 10 < th dose dependent rect. 15 1
147 403.25 radiation 1 90 > th dose dependent rect. 4 4
163 403.43 wind 1 90 < th dose dependent rect. 5 5
180 403.85 radiation 10 10 > th dose dependent rect. 17 15
226 404.11 atmosphere 1000 90 < th dose independent rect. 21 11
294 404.82 atmosphere 1000 720 < th dose independent rect. 21 1
295 404.82 atmosphere 1000 10 < th dose independent rect. 21 12
345 405.19 atmosphere 1000 90 > th dose independent rect. 11 19
367 405.31 radiation 10 90 < th dose dependent rect. 14 1
390 405.66 atmosphere 1005 720 < th dose dependent rect. 21 1
421 405.90 temperature 20 30 > th dose independent rect. 7 1
437 406.04 wind 9 720 < th dose dependent rect. 16 4
455 406.09 temperature 20 10 > th dose dependent rect. 7 1
458 406.17 wind 5 720 < th dose independent rect. 16 3
464 406.29 atmosphere 1000 30 < th dose dependent rect. 15 18
466 406.33 temperature 30 720 < th dose dependent rect. 16 4
515 406.63 temperature 30 720 < th dose dependent rect. 17 2
518 406.68 temperature 20 90 > th dose independent rect. 5 4
523 406.74 wind 7 90 < th dose independent rect. 9 21
525 406.76 atmosphere 1000 270 > th dose independent sin 11 NA
530 406.85 atmosphere 1000 10 > th dose independent sin 9 NA
536 406.91 atmosphere 1015 30 < th dose independent rect. 8 23
554 407.17 temperature 15 30 > th dose dependent rect. 18 14
556 407.19 atmosphere 1000 720 > th dose independent rect. 16 6
560 407.24 atmosphere 1000 30 > th dose independent rect. 17 14
568 407.29 atmosphere 1015 90 < th dose independent rect. 9 21
577 407.44 atmosphere 1005 90 < th dose dependent rect. 21 11
588 407.52 atmosphere 1000 270 < th dose independent sin 11 NA
590 407.52 atmosphere 1010 90 < th dose dependent rect. 23 9
638 407.65 atmosphere 1000 30 < th dose independent sin 9 NA
639 407.65 humidity 50 270 > th dose dependent rect. 17 11
682 407.85 wind 7 30 < th dose independent rect. 8 23
705 408.11 wind 5 720 < th dose independent rect. 16 1
710 408.16 humidity 90 10 < th dose independent rect. 7 1
717 408.19 temperature 20 90 > th dose independent rect. 1 8
734 408.33 wind 1 14400 < th dose dependent rect. 2 1
782 408.62 humidity 50 720 > th dose dependent rect. 16 4
799 408.73 temperature 30 270 < th dose dependent rect. 17 11
827 408.91 atmosphere 1015 30 < th dose dependent rect. 7 1
842 408.98 atmosphere 1005 30 < th dose independent rect. 1 8
852 409.01 wind 7 720 < th dose independent rect. 16 20
853 409.03 wind 7 720 < th dose independent rect. 16 13
856 409.04 humidity 60 720 > th dose dependent rect. 17 2
898 409.22 temperature 20 1440 > th dose independent rect. 6 14
914 409.31 wind 9 4320 < th dose independent rect. 7 3
975 409.59 wind 7 720 < th dose independent rect. 9 19
990 409.64 atmosphere 1000 30 > th dose independent rect. 21 21
999 409.67 atmosphere 1010 30 < th dose dependent rect. 18 15