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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0261000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.16 (0.0544) R2 : 0.554
β1 : 0.583 (0.315) R2dD : 0.0144 R2D : -0.0684
β2 : 2.37 (0.113) R2dC : 0.524 R2C : 0.362
β3 : -2.04 (0.244) R2dE : 0.181 R2E : -0.209
β4 : -2.54 (0.423) R2dD*C : 0.0395 R2D*C : 0.0155
β5 : 12 (1.87) R2dD*E : 0.211 R2D*E : 0.0245
γ1 : -0.133 (0.107) R2dN8 : 0.00282 R2N8 : 0.00579
σ : 0.801
deviance : 290.67
__
_____
C
peak time of C : 22.1
E
wheather : temperature
threshold : 26.39
memory length : 773
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
290.67 0.801 4.16 0.583 2.37 -2.04 -2.54 12 -0.133 22.1 26.39 773 -- --
311.62 0.822 4.38 -1.17 2.2 -0.812 -1.81 -- -0.503 22.6 26.5 983 -- --
314.1 0.825 4.18 0.639 2.36 -2.09 -- 12.1 -0.228 22.2 27.2 806 -- --
323.52 0.838 4.38 -1.06 2.23 -0.87 -- -- -0.506 22.6 26.62 968 -- --
548.1 1.1 4.21 -0.358 -- -1.63 -- 6.05 -0.194 -- 24.62 25 -- --
330.31 0.852 4.37 -1.35 2.03 -- -1.91 -- -0.516 22.6 -- -- -- --
345.35 0.87 4.37 -1.28 2.04 -- -- -- -0.511 22.7 -- -- -- --
536.57 1.08 4.25 -0.876 -- -1.85 -- -- -0.22 -- 17.51 9 -- --
351.36 0.873 4.33 -- 2.3 -1.13 -- -- -0.345 22.6 25.86 967 -- --
601.17 1.15 4.32 -1.24 -- -- -- -- -0.5 -- -- -- -- --
388.44 0.922 4.34 -- 2.03 -- -- -- -0.368 22.6 -- -- -- --
554.18 1.1 4.19 -- -- -2.44 -- -- -0.0481 -- 14.86 2 -- --
641.68 1.18 4.29 -- -- -- -- -- -0.362 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 286.69 temperature 25.0 30 < th dose independent rect. 16 11
6 288.28 temperature 30.0 30 < th dose dependent rect. 17 10
16 289.76 wind 9.0 30 < th dose dependent rect. 3 3
23 290.48 humidity 50.0 30 > th dose dependent rect. 3 3
28 290.73 wind 7.0 30 < th dose independent rect. 3 3
30 290.81 precipitation 0.1 30 < th dose independent rect. 6 21
31 290.81 precipitation 0.1 30 < th dose dependent rect. 6 21
35 290.95 temperature 10.0 30 > th dose independent rect. 3 3
37 290.95 temperature 30.0 30 < th dose independent rect. 3 3
38 290.95 humidity 50.0 30 > th dose independent rect. 3 3
41 290.95 atmosphere 995.0 30 > th dose independent rect. 3 3
42 290.95 atmosphere 1010.0 30 < th dose independent rect. 3 3
44 290.95 radiation 20.0 30 < th dose independent rect. 3 3
47 290.95 temperature 10.0 30 > th dose independent rect. 6 21
51 291.22 precipitation 0.1 30 < th dose independent rect. 3 3
52 291.22 precipitation 0.1 30 < th dose dependent rect. 3 3
53 291.25 humidity 50.0 10 > th dose independent rect. 6 21
60 291.56 atmosphere 1015.0 30 < th dose dependent rect. 3 3
76 291.57 radiation 40.0 30 < th dose dependent rect. 3 3
80 292.32 temperature 25.0 90 < th dose independent rect. 1 5
82 292.40 wind 7.0 10 > th dose dependent rect. 4 7
89 292.41 wind 7.0 10 > th dose dependent rect. 9 2
95 292.45 wind 9.0 10 > th dose independent rect. 19 16
102 292.45 temperature 10.0 30 > th dose dependent rect. 13 17
128 292.61 atmosphere 995.0 30 > th dose independent rect. 6 21
130 292.67 temperature 30.0 30 < th dose dependent rect. 6 21
134 292.90 wind 9.0 10 > th dose independent rect. 21 14
143 292.95 humidity 60.0 10 < th dose independent rect. 10 1
145 292.95 humidity 60.0 10 < th dose dependent rect. 10 1
147 292.98 wind 5.0 10 > th dose independent rect. 10 1
151 292.98 wind 9.0 30 > th dose independent rect. 1 10
168 293.11 wind 9.0 1440 < th dose independent rect. 4 3
169 293.11 temperature 10.0 1440 > th dose independent rect. 4 3
172 293.11 temperature 30.0 1440 < th dose independent rect. 4 3
176 293.11 humidity 50.0 1440 > th dose independent rect. 4 3
181 293.11 atmosphere 995.0 1440 > th dose independent rect. 4 3
182 293.11 atmosphere 1015.0 1440 < th dose independent rect. 4 3
183 293.11 radiation 40.0 1440 < th dose independent rect. 4 3
187 293.11 temperature 10.0 1440 > th dose independent rect. 7 21
194 293.29 temperature 10.0 30 > th dose dependent rect. 3 3
196 293.34 temperature 25.0 720 > th dose dependent rect. 17 22
201 293.47 temperature 30.0 10 < th dose dependent rect. 17 8
241 293.59 wind 9.0 30 < th dose independent rect. 6 21
290 294.21 temperature 25.0 720 > th dose dependent rect. 9 14
296 294.43 humidity 90.0 90 > th dose independent rect. 1 6
306 294.62 wind 7.0 10 > th dose independent rect. 4 7
319 294.64 temperature 25.0 270 < th dose independent rect. 1 1
339 294.75 temperature 25.0 720 > th dose dependent rect. 3 20
346 294.78 temperature 25.0 720 > th dose dependent rect. 11 4
377 295.13 temperature 25.0 720 > th dose dependent sin 22 NA
380 295.14 temperature 25.0 720 > th dose dependent rect. 8 20
492 295.48 radiation 1.0 90 < th dose independent rect. 3 11
493 295.48 temperature 30.0 90 < th dose dependent rect. 6 18
527 295.61 temperature 25.0 720 > th dose dependent no NA NA
532 295.64 temperature 25.0 720 > th dose dependent rect. 20 23
558 295.80 radiation 1.0 90 < th dose independent rect. 3 7
577 295.93 temperature 30.0 720 > th dose independent rect. 13 1
586 296.01 wind 7.0 30 < th dose independent rect. 13 17
593 296.05 radiation 10.0 30 < th dose dependent rect. 3 11
595 296.07 temperature 25.0 720 > th dose dependent rect. 13 23
617 296.34 radiation 10.0 30 < th dose dependent rect. 3 7
637 296.59 radiation 10.0 30 < th dose dependent rect. 3 14
656 296.68 temperature 25.0 30 < th dose independent sin 16 NA
683 296.90 temperature 30.0 30 < th dose dependent rect. 3 3
685 296.92 radiation 10.0 30 < th dose dependent rect. 3 5
700 297.06 temperature 10.0 270 > th dose dependent rect. 11 17
728 297.35 temperature 30.0 90 < th dose dependent sin 17 NA
737 297.40 atmosphere 1015.0 270 < th dose dependent rect. 1 3
760 297.62 atmosphere 1015.0 30 < th dose independent rect. 6 21
761 297.62 atmosphere 1015.0 270 < th dose dependent rect. 24 5
774 297.72 temperature 25.0 90 > th dose independent rect. 13 10
786 297.83 temperature 30.0 30 < th dose independent rect. 6 21
796 297.96 atmosphere 995.0 30 > th dose dependent rect. 3 3
802 298.02 radiation 40.0 30 < th dose independent rect. 12 18
815 298.11 temperature 20.0 30 > th dose dependent sin 16 NA
817 298.11 humidity 50.0 30 > th dose dependent rect. 6 21
828 298.23 temperature 25.0 30 > th dose independent sin 16 NA
829 298.23 atmosphere 1015.0 30 < th dose dependent rect. 24 6
838 298.40 radiation 1.0 10 > th dose independent rect. 6 8
839 298.40 temperature 15.0 30 > th dose independent rect. 13 17
844 298.43 temperature 25.0 30 < th dose independent rect. 12 15
872 298.58 humidity 80.0 10 > th dose dependent rect. 3 7
899 298.76 atmosphere 1010.0 30 < th dose independent rect. 13 17
931 298.95 temperature 30.0 270 < th dose dependent rect. 11 13
940 299.06 temperature 25.0 90 > th dose dependent sin 14 NA
941 299.06 humidity 70.0 30 > th dose dependent rect. 24 6
943 299.08 humidity 90.0 90 > th dose dependent rect. 1 6
947 299.13 radiation 1.0 90 > th dose independent sin 5 NA
949 299.16 radiation 1.0 10 < th dose dependent rect. 16 11
962 299.25 radiation 40.0 270 < th dose dependent rect. 14 10
966 299.29 temperature 25.0 30 > th dose independent rect. 14 16
972 299.32 temperature 15.0 270 > th dose independent rect. 24 15