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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0260800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Hv1LRR2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.028) R2 : 0.00134
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0461 (0.059) R2dN8 : 0.00172 R2N8 : 0.00134
σ : 0.528
deviance : 128.02
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
123.65 0.522 2.93 -0.48 0.0132 -0.602 0.276 3.75 -0.0731 9.71 1000 674 -- --
125.45 0.522 2.89 -0.27 0.00208 0.0955 -0.322 -- -0.088 22 999.1 626 -- --
123.91 0.518 2.93 -0.467 0.0183 -0.607 -- 3.78 -0.0682 8.86 1000 738 -- --
125.61 0.522 2.9 -0.266 0.00489 0.0938 -- -- -0.0976 21.7 1004 569 -- --
123.93 0.518 2.93 -0.477 -- -0.619 -- 3.85 -0.0725 -- 1000 742 -- --
125.65 0.525 2.89 -0.282 0.00898 -- -0.334 -- -0.0769 22.7 -- -- -- --
125.98 0.526 2.89 -0.27 0.0496 -- -- -- -0.0772 4.05 -- -- -- --
125.61 0.522 2.9 -0.268 -- 0.0974 -- -- -0.0977 -- 1004 550 -- --
127.44 0.526 2.89 -- 0.0241 0.102 -- -- -0.0601 4.51 1004 548 -- --
126.12 0.525 2.89 -0.268 -- -- -- -- -0.0759 -- -- -- -- --
127.91 0.529 2.89 -- 0.0444 -- -- -- -0.0471 4.14 -- -- -- --
127.5 0.526 2.89 -- -- 0.1 -- -- -0.0684 -- 1004 596 -- --
128.02 0.528 2.89 -- -- -- -- -- -0.0461 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 112.44 wind 5.0 90 > th dose dependent rect. 4 5
5 112.56 radiation 20.0 270 > th dose dependent rect. 6 1
19 112.69 wind 7.0 90 > th dose independent rect. 7 2
26 112.71 wind 7.0 90 > th dose independent rect. 2 7
28 112.71 wind 7.0 90 > th dose dependent rect. 2 7
36 112.91 radiation 20.0 270 > th dose independent rect. 6 1
66 118.12 radiation 40.0 90 > th dose dependent rect. 8 1
104 119.64 temperature 25.0 10 < th dose dependent rect. 8 2
113 120.27 humidity 70.0 4320 > th dose independent rect. 21 1
114 120.32 wind 9.0 30 < th dose independent rect. 21 23
117 120.42 radiation 10.0 1440 < th dose dependent rect. 21 1
118 120.42 radiation 20.0 14400 < th dose dependent rect. 21 1
130 120.47 temperature 15.0 1440 > th dose independent rect. 21 1
131 120.47 temperature 15.0 30 > th dose independent rect. 21 23
137 120.49 temperature 30.0 1440 < th dose independent rect. 21 1
141 120.49 humidity 50.0 1440 > th dose independent rect. 21 1
147 120.49 atmosphere 995.0 1440 > th dose independent rect. 21 1
148 120.49 radiation 1.0 1440 < th dose independent rect. 21 1
168 120.49 temperature 10.0 1440 > th dose independent rect. 22 23
172 120.53 atmosphere 1005.0 30 > th dose dependent rect. 20 1
174 120.54 atmosphere 1005.0 30 > th dose independent rect. 20 1
178 120.56 humidity 80.0 30 > th dose independent rect. 20 1
180 120.58 temperature 25.0 30 > th dose independent rect. 20 1
181 120.59 wind 7.0 30 < th dose independent rect. 20 1
182 120.59 humidity 90.0 30 < th dose independent rect. 20 1
183 120.60 wind 3.0 30 > th dose independent rect. 20 1
188 120.61 temperature 10.0 30 > th dose independent rect. 20 1
191 120.61 temperature 30.0 30 < th dose independent rect. 20 1
192 120.61 humidity 50.0 30 > th dose independent rect. 20 1
196 120.61 atmosphere 1010.0 30 < th dose independent rect. 20 1
198 120.61 radiation 1.0 30 < th dose independent rect. 20 1
203 120.61 precipitation 0.1 30 < th dose independent rect. 20 1
205 120.61 temperature 10.0 30 > th dose dependent rect. 20 1
208 120.61 humidity 50.0 30 > th dose dependent rect. 20 1
209 120.61 radiation 1.0 30 < th dose dependent rect. 20 1
214 120.61 precipitation 0.1 30 < th dose dependent rect. 20 1
217 120.63 radiation 40.0 90 > th dose independent rect. 8 1
234 120.63 wind 1.0 30 > th dose dependent rect. 20 1
235 120.63 wind 9.0 30 < th dose dependent rect. 20 1
240 120.72 temperature 30.0 30 < th dose dependent rect. 20 1
255 120.73 humidity 90.0 30 < th dose dependent rect. 20 1
259 120.76 wind 9.0 1440 < th dose independent rect. 21 1
260 120.77 atmosphere 1015.0 30 < th dose dependent rect. 20 1
277 121.00 humidity 50.0 30 < th dose dependent rect. 17 19
283 121.03 humidity 50.0 90 > th dose independent rect. 21 23
287 121.04 humidity 50.0 30 < th dose independent rect. 17 19
337 121.22 humidity 50.0 30 < th dose dependent rect. 17 1
358 121.26 humidity 50.0 30 < th dose independent rect. 17 1
377 121.27 radiation 10.0 30 > th dose independent rect. 17 1
401 121.47 humidity 80.0 90 < th dose dependent rect. 7 2
402 121.49 radiation 10.0 30 > th dose dependent rect. 17 1
474 121.88 radiation 40.0 14400 < th dose independent rect. 15 6
492 121.95 radiation 40.0 14400 < th dose independent rect. 15 13
494 121.96 atmosphere 1005.0 10 < th dose independent rect. 23 1
502 121.97 radiation 40.0 14400 < th dose independent rect. 15 2
505 121.98 radiation 40.0 14400 < th dose independent rect. 15 8
506 121.98 radiation 40.0 14400 < th dose independent rect. 15 16
527 122.05 temperature 15.0 30 > th dose dependent rect. 20 4
528 122.06 precipitation 0.1 30 < th dose independent rect. 21 23
529 122.06 precipitation 0.1 30 < th dose dependent rect. 21 23
541 122.13 precipitation 0.1 1440 < th dose independent rect. 21 1
542 122.13 precipitation 0.1 1440 < th dose dependent rect. 21 1
552 122.19 radiation 10.0 14400 < th dose independent rect. 18 3
558 122.22 radiation 10.0 14400 < th dose independent rect. 18 10
575 122.30 wind 9.0 43200 > th dose dependent rect. 1 1
577 122.31 atmosphere 1005.0 270 < th dose independent rect. 21 2
581 122.33 atmosphere 995.0 30 > th dose independent rect. 21 23
586 122.36 radiation 10.0 14400 < th dose independent rect. 18 5
593 122.38 wind 9.0 43200 > th dose independent rect. 1 1
607 122.41 radiation 20.0 90 > th dose independent rect. 16 17
620 122.45 wind 1.0 30 > th dose independent rect. 21 23
622 122.47 radiation 40.0 14400 < th dose dependent rect. 18 3
623 122.47 radiation 1.0 14400 > th dose dependent rect. 18 11
629 122.49 radiation 1.0 14400 > th dose dependent rect. 18 1
639 122.50 wind 1.0 30 < th dose independent rect. 23 1
642 122.50 radiation 10.0 43200 > th dose dependent rect. 5 1
654 122.50 temperature 30.0 30 > th dose dependent rect. 17 18
658 122.53 atmosphere 1015.0 30 < th dose independent rect. 21 23
659 122.53 temperature 30.0 30 > th dose dependent rect. 17 1
665 122.54 temperature 20.0 30 > th dose independent rect. 20 18
669 122.55 radiation 10.0 90 > th dose dependent rect. 16 17
673 122.56 temperature 30.0 30 < th dose independent rect. 21 23
684 122.59 wind 1.0 43200 < th dose dependent rect. 9 1
686 122.61 wind 1.0 30 < th dose dependent rect. 23 1
690 122.63 radiation 1.0 14400 > th dose independent rect. 14 1
695 122.64 atmosphere 1010.0 30 < th dose independent rect. 20 4
698 122.65 radiation 1.0 14400 < th dose independent rect. 14 1
700 122.65 temperature 20.0 10 > th dose independent rect. 20 4
702 122.65 radiation 1.0 14400 < th dose dependent rect. 14 1
706 122.66 radiation 1.0 14400 > th dose independent rect. 12 3
731 122.68 radiation 1.0 14400 > th dose independent rect. 12 1
741 122.69 radiation 1.0 14400 < th dose independent rect. 12 3
746 122.69 radiation 40.0 14400 < th dose dependent rect. 18 10
748 122.70 radiation 1.0 14400 > th dose independent rect. 9 6
749 122.70 radiation 1.0 14400 < th dose independent rect. 9 6
752 122.70 radiation 30.0 14400 < th dose independent rect. 18 13
764 122.72 radiation 30.0 14400 < th dose independent rect. 5 2
769 122.72 radiation 1.0 14400 < th dose dependent rect. 9 6
778 122.74 wind 1.0 43200 < th dose independent rect. 9 1
798 122.75 radiation 10.0 30 < th dose dependent rect. 21 23
801 122.76 radiation 40.0 43200 > th dose independent rect. 15 17
803 122.76 radiation 40.0 14400 < th dose dependent rect. 18 5
858 122.81 humidity 90.0 270 < th dose independent rect. 5 2
860 122.81 atmosphere 1000.0 720 > th dose independent rect. 8 8
875 122.82 radiation 40.0 43200 > th dose independent rect. 15 1
907 122.83 radiation 10.0 14400 < th dose independent rect. 5 1
908 122.83 humidity 70.0 90 < th dose independent rect. 7 2
941 122.84 humidity 50.0 30 < th dose independent sin 8 NA
943 122.84 temperature 20.0 270 < th dose independent rect. 6 1
953 122.85 wind 1.0 43200 > th dose independent rect. 9 1
966 122.86 radiation 10.0 14400 < th dose independent rect. 1 5
967 122.86 temperature 30.0 30 < th dose independent rect. 14 6
974 122.87 temperature 15.0 43200 > th dose independent rect. 18 1
987 122.88 temperature 15.0 43200 < th dose independent rect. 18 1
991 122.88 radiation 10.0 14400 < th dose independent rect. 22 8