Os08g0260400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Helix-loop-helix DNA-binding domain containing protein.
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Os08g0260400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Helix-loop-helix DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 643.46 | 1.19 | 4.25 | -2.89 | 0.476 | 1.17 | -0.112 | -4.6 | -1.28 | 9.01 | 26.6 | 1571 | -- | -- |
| 658.41 | 1.2 | 4.09 | -1.49 | 0.413 | 0.819 | -0.183 | -- | -0.864 | 9.81 | 27.2 | 1520 | -- | -- |
| 643.5 | 1.18 | 4.25 | -2.89 | 0.477 | 1.17 | -- | -4.59 | -1.28 | 8.98 | 26.59 | 1571 | -- | -- |
| 658.02 | 1.19 | 4.07 | -1.5 | 0.427 | 0.786 | -- | -- | -0.813 | 9.62 | 27.2 | 1515 | -- | -- |
| 655.91 | 1.19 | 4.25 | -2.83 | -- | 1.13 | -- | -4.43 | -1.24 | -- | 26.68 | 1528 | -- | -- |
| 681.61 | 1.22 | 4.03 | -1.2 | 0.424 | -- | -0.0582 | -- | -0.624 | 9.41 | -- | -- | -- | -- |
| 681.62 | 1.22 | 4.03 | -1.2 | 0.424 | -- | -- | -- | -0.624 | 9.39 | -- | -- | -- | -- |
| 669.18 | 1.2 | 4.08 | -1.5 | -- | 0.769 | -- | -- | -0.81 | -- | 27.19 | 1515 | -- | -- |
| 712.28 | 1.24 | 4.02 | -- | 0.454 | 0.446 | -- | -- | -0.583 | 9.31 | 27.1 | 1389 | -- | -- |
| 692.16 | 1.23 | 4.04 | -1.21 | -- | -- | -- | -- | -0.622 | -- | -- | -- | -- | -- |
| 719.81 | 1.26 | 4 | -- | 0.426 | -- | -- | -- | -0.49 | 9.6 | -- | -- | -- | -- |
| 722.34 | 1.25 | 4.03 | -- | -- | 0.388 | -- | -- | -0.551 | -- | 28.9 | 1428 | -- | -- |
| 730.53 | 1.26 | 4.01 | -- | -- | -- | -- | -- | -0.488 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 641.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 2 | 642.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 5 | 642.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 9 |
| 6 | 642.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 19 |
| 58 | 644.13 | temperature | 25 | 1440 | > th | dose dependent | sin | 15 | NA |
| 94 | 645.17 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 109 | 645.52 | wind | 1 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 130 | 646.04 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 16 |
| 133 | 646.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 19 |
| 161 | 646.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 12 |
| 201 | 646.34 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 23 |
| 202 | 646.34 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 210 | 646.37 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 251 | 646.68 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 261 | 646.90 | wind | 1 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 263 | 646.93 | humidity | 80 | 10 | > th | dose dependent | rect. | 21 | 2 |
| 273 | 647.13 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 298 | 647.63 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 306 | 647.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 308 | 647.73 | humidity | 80 | 90 | > th | dose independent | rect. | 21 | 1 |
| 311 | 647.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 312 | 647.76 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 320 | 647.99 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 22 | 1 |
| 329 | 648.09 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 20 | 3 |
| 334 | 648.19 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 339 | 648.33 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 20 |
| 342 | 648.35 | radiation | 40 | 43200 | < th | dose independent | rect. | 5 | 7 |
| 345 | 648.35 | radiation | 40 | 43200 | < th | dose independent | rect. | 22 | 14 |
| 349 | 648.36 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 368 | 648.51 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 16 |
| 369 | 648.54 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 370 | 648.56 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 372 | 648.57 | radiation | 20 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 373 | 648.57 | radiation | 20 | 43200 | < th | dose independent | rect. | 22 | 11 |
| 376 | 648.58 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 379 | 648.58 | radiation | 20 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 389 | 648.61 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 390 | 648.63 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 397 | 648.65 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 4 |
| 410 | 648.67 | radiation | 40 | 43200 | < th | dose independent | sin | 9 | NA |
| 415 | 648.71 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 425 | 648.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 10 |
| 426 | 648.86 | temperature | 25 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 439 | 648.93 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 5 |
| 474 | 649.08 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 483 | 649.16 | wind | 1 | 720 | < th | dose independent | rect. | 4 | 1 |
| 509 | 649.25 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 510 | 649.25 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 527 | 649.27 | radiation | 20 | 43200 | < th | dose independent | sin | 12 | NA |
| 546 | 649.28 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 552 | 649.32 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 10 |
| 553 | 649.32 | radiation | 40 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 561 | 649.32 | radiation | 40 | 43200 | < th | dose independent | rect. | 5 | 18 |
| 562 | 649.32 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 18 |
| 563 | 649.32 | radiation | 40 | 43200 | < th | dose independent | rect. | 23 | 18 |
| 591 | 649.33 | radiation | 40 | 43200 | < th | dose independent | no | NA | NA |
| 717 | 649.46 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 725 | 649.50 | temperature | 25 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 740 | 649.52 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 742 | 649.53 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 793 | 649.64 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 794 | 649.64 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 14 |
| 814 | 649.68 | radiation | 20 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 884 | 649.77 | radiation | 40 | 43200 | > th | dose dependent | sin | 10 | NA |
| 946 | 650.02 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 947 | 650.02 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 11 |
| 956 | 650.03 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 16 |