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Os08g0260000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0147) R2 : 0.631
β1 : -1.13 (0.054) R2dD : 0.368 R2D : 0.203
β2 : 0.576 (0.0368) R2dC : 0.199 R2C : 0.122
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.47 (0.0315) R2dN8 : 0.242 R2N8 : 0.0775
σ : 0.277
deviance : 35.01
__
_____
C
peak time of C : 3.21
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.98 0.253 12.2 -0.598 0.536 -0.0713 -0.531 3.5 -0.386 3.21 30.08 1125 -- --
31.8 0.263 12.2 -1.15 0.557 0.24 -0.259 -- -0.422 2.93 29.6 5459 -- --
29.61 0.253 12.2 -0.624 0.557 -0.0513 -- 3.72 -0.389 3.5 30 992 -- --
32.08 0.264 12.2 -1.2 0.533 0.259 -- -- -0.431 3.22 29.83 5462 -- --
45.62 0.315 12.2 -0.555 -- -0.035 -- 3.72 -0.381 -- 30.3 1165 -- --
34.48 0.275 12.2 -1.14 0.577 -- -0.405 -- -0.472 3.12 -- -- -- --
35.01 0.277 12.2 -1.13 0.576 -- -- -- -0.47 3.21 -- -- -- --
48.97 0.326 12.2 -1.18 -- 0.289 -- -- -0.401 -- 30.2 5473 -- --
68.36 0.385 12.2 -- 0.538 0.076 -- -- -0.325 3.13 30.95 5507 -- --
53.86 0.343 12.2 -1.11 -- -- -- -- -0.455 -- -- -- -- --
68.65 0.388 12.2 -- 0.554 -- -- -- -0.344 3.21 -- -- -- --
84.43 0.429 12.2 -- -- -0.232 -- -- -0.355 -- 30.2 5473 -- --
86.09 0.433 12.2 -- -- -- -- -- -0.332 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.40 atmosphere 1000.0 270 > th dose independent rect. 18 9
2 27.41 atmosphere 1015.0 270 < th dose dependent rect. 13 9
3 27.53 temperature 10.0 270 > th dose dependent rect. 14 17
5 27.62 temperature 10.0 270 > th dose dependent rect. 13 19
7 27.64 atmosphere 1015.0 90 < th dose dependent rect. 15 18
9 27.83 atmosphere 995.0 270 > th dose dependent rect. 17 10
11 27.85 atmosphere 1015.0 270 < th dose dependent rect. 13 18
19 27.98 atmosphere 1010.0 90 < th dose dependent rect. 15 8
20 27.98 atmosphere 995.0 270 > th dose dependent rect. 9 15
21 27.98 atmosphere 1015.0 10 < th dose dependent rect. 16 17
35 28.10 atmosphere 1000.0 270 > th dose independent rect. 19 19
37 28.11 temperature 30.0 720 < th dose independent rect. 11 17
40 28.14 temperature 30.0 720 < th dose independent rect. 13 15
45 28.16 temperature 10.0 10 > th dose dependent rect. 16 17
46 28.17 atmosphere 1000.0 270 > th dose independent rect. 18 21
61 28.27 temperature 30.0 720 < th dose independent rect. 6 22
70 28.32 temperature 30.0 720 < th dose independent sin 15 NA
119 28.51 temperature 30.0 720 < th dose independent rect. 14 7
131 28.55 temperature 30.0 720 < th dose independent rect. 11 10
133 28.56 temperature 30.0 720 < th dose independent rect. 3 16
142 28.58 temperature 30.0 720 < th dose independent rect. 2 18
145 28.59 temperature 30.0 720 < th dose independent rect. 9 12
185 28.68 temperature 10.0 270 > th dose dependent rect. 13 9
198 28.71 atmosphere 995.0 90 > th dose dependent sin 16 NA
200 28.72 temperature 30.0 30 < th dose dependent sin 13 NA
204 28.73 temperature 30.0 720 < th dose dependent rect. 11 10
209 28.74 temperature 30.0 720 < th dose dependent rect. 13 8
213 28.75 temperature 30.0 720 < th dose independent rect. 1 21
254 28.81 atmosphere 1000.0 10 > th dose independent rect. 20 20
266 28.84 temperature 30.0 720 < th dose independent sin 1 NA
326 28.94 atmosphere 1010.0 10 < th dose dependent rect. 16 6
327 28.94 temperature 30.0 270 < th dose dependent rect. 17 10
336 28.95 atmosphere 995.0 720 > th dose dependent rect. 11 10
349 28.97 atmosphere 1000.0 10 > th dose independent rect. 20 10
361 28.99 temperature 30.0 720 < th dose dependent sin 20 NA
439 29.10 atmosphere 1000.0 270 > th dose independent rect. 9 15
456 29.12 atmosphere 1015.0 270 < th dose dependent sin 18 NA
507 29.18 atmosphere 995.0 10 > th dose dependent rect. 20 10
534 29.22 atmosphere 995.0 720 > th dose dependent rect. 14 7
585 29.26 atmosphere 995.0 10 > th dose dependent rect. 11 15
592 29.27 atmosphere 1015.0 270 < th dose independent rect. 14 18
617 29.30 atmosphere 1015.0 90 < th dose independent rect. 16 17
629 29.31 atmosphere 1000.0 270 > th dose independent rect. 8 18
660 29.34 atmosphere 1015.0 10 < th dose independent rect. 16 17
661 29.34 precipitation 0.1 270 < th dose independent rect. 14 17
670 29.34 precipitation 0.1 270 < th dose dependent rect. 14 17
679 29.36 temperature 30.0 1440 < th dose independent rect. 9 3
683 29.36 atmosphere 995.0 720 > th dose dependent rect. 17 4
704 29.38 wind 7.0 270 < th dose independent rect. 8 6
706 29.38 temperature 30.0 1440 < th dose independent rect. 18 18
715 29.39 temperature 30.0 1440 < th dose independent rect. 11 1
730 29.40 temperature 30.0 1440 < th dose independent rect. 20 16
738 29.41 temperature 30.0 1440 < th dose independent rect. 7 5
780 29.44 temperature 30.0 1440 < th dose independent rect. 22 14
808 29.47 temperature 30.0 1440 < th dose independent sin 7 NA
827 29.49 humidity 50.0 270 > th dose independent rect. 8 15
863 29.52 atmosphere 1000.0 10 > th dose independent rect. 20 7
866 29.52 precipitation 0.1 90 < th dose independent rect. 16 17
867 29.52 temperature 30.0 1440 < th dose independent rect. 18 20
868 29.52 atmosphere 995.0 10 > th dose dependent rect. 20 7
873 29.52 precipitation 0.1 90 < th dose dependent rect. 16 17
875 29.53 temperature 30.0 1440 > th dose independent sin 6 NA
876 29.53 temperature 30.0 1440 > th dose independent rect. 9 3
878 29.53 atmosphere 995.0 90 > th dose independent rect. 9 7
913 29.56 temperature 30.0 1440 > th dose independent rect. 9 5
936 29.57 temperature 20.0 30 > th dose dependent rect. 23 10
949 29.58 humidity 50.0 90 > th dose independent rect. 9 7
955 29.58 temperature 10.0 30 > th dose dependent sin 12 NA
976 29.60 atmosphere 995.0 10 > th dose independent rect. 9 7
982 29.60 temperature 30.0 1440 > th dose independent rect. 18 21
985 29.60 radiation 10.0 270 < th dose dependent sin 14 NA
986 29.60 temperature 30.0 1440 > th dose dependent rect. 13 2