Os08g0259100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0259100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 176.52 | 0.624 | 6.77 | 1.09 | 1.25 | -1.67 | 0.844 | -2.53 | 0.372 | 14.5 | 23.2 | 1040 | -- | -- |
| 195.36 | 0.651 | 6.83 | 0.496 | 1.18 | -1.55 | 0.408 | -- | 0.3 | 14.8 | 23.2 | 1011 | -- | -- |
| 178.46 | 0.622 | 6.77 | 1.1 | 1.25 | -1.67 | -- | -2.43 | 0.386 | 14.6 | 23.1 | 1030 | -- | -- |
| 192.12 | 0.646 | 6.86 | 0.282 | 1.19 | -1.58 | -- | -- | 0.188 | 14.3 | 23.3 | 898 | -- | -- |
| 231.66 | 0.709 | 6.76 | 0.98 | -- | -1.49 | -- | -2.09 | 0.449 | -- | 22.9 | 306 | -- | -- |
| 334.42 | 0.857 | 6.7 | 0.841 | 1.02 | -- | 0.235 | -- | 0.843 | 15.2 | -- | -- | -- | -- |
| 334.59 | 0.857 | 6.7 | 0.846 | 1.02 | -- | -- | -- | 0.844 | 15.2 | -- | -- | -- | -- |
| 245.47 | 0.73 | 6.84 | 0.208 | -- | -1.54 | -- | -- | 0.206 | -- | 23.01 | 319 | -- | -- |
| 191.67 | 0.645 | 6.87 | -- | 1.24 | -1.76 | -- | -- | 0.064 | 14.3 | 23.4 | 899 | -- | -- |
| 393.43 | 0.927 | 6.7 | 0.802 | -- | -- | -- | -- | 0.817 | -- | -- | -- | -- | -- |
| 353.44 | 0.879 | 6.72 | -- | 1 | -- | -- | -- | 0.75 | 15.2 | -- | -- | -- | -- |
| 246.44 | 0.731 | 6.85 | -- | -- | -1.57 | -- | -- | 0.166 | -- | 23.02 | 306 | -- | -- |
| 410.41 | 0.946 | 6.72 | -- | -- | -- | -- | -- | 0.728 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 174.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 8 | 179.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 21 | 181.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 30 | 181.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 36 | 182.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 48 | 182.59 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 53 | 182.86 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 54 | 182.95 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 58 | 183.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 68 | 183.35 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 69 | 183.41 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 97 | 184.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 110 | 184.82 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 153 | 186.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 175 | 186.73 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 199 | 187.58 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 268 | 188.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 16 |
| 276 | 188.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 10 |
| 279 | 188.83 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 288 | 188.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 290 | 188.90 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 319 | 189.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 630 | 190.79 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 651 | 190.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 724 | 191.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 744 | 191.41 | temperature | 10 | 1440 | > th | dose dependent | sin | 13 | NA |
| 830 | 191.85 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 14 |
| 924 | 192.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |