Os08g0256200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os08g0256200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 454.87 | 1 | 3.82 | 0.9 | 0.663 | -0.591 | -0.89 | 13.4 | 0.0875 | 16.8 | 31.5 | 4263 | -- | -- |
| 495.11 | 1.04 | 4.09 | -0.9 | 0.512 | 0.571 | -1.23 | -- | -0.0453 | 17 | 31.5 | 4263 | -- | -- |
| 456.91 | 0.996 | 3.82 | 0.902 | 0.661 | -0.593 | -- | 13.5 | 0.0885 | 16.9 | 31.5 | 4257 | -- | -- |
| 465.36 | 1 | 4.05 | -1.05 | 0.631 | 1.11 | -- | -- | 0.113 | 16.5 | 32.1 | 4220 | -- | -- |
| 477.86 | 1.02 | 3.8 | 0.974 | -- | -0.591 | -- | 13.2 | 0.116 | -- | 32.1 | 4793 | -- | -- |
| 500.46 | 1.05 | 4.09 | -0.863 | 0.594 | -- | -1.06 | -- | -0.0725 | 16.9 | -- | -- | -- | -- |
| 503.21 | 1.05 | 4.1 | -0.866 | 0.591 | -- | -- | -- | -0.0779 | 17.2 | -- | -- | -- | -- |
| 486.69 | 1.03 | 4.05 | -1.13 | -- | 1.05 | -- | -- | 0.0759 | -- | 32 | 4294 | -- | -- |
| 497.01 | 1.04 | 4.05 | -- | 0.631 | 0.961 | -- | -- | 0.178 | 17 | 32.09 | 4240 | -- | -- |
| 521.48 | 1.07 | 4.09 | -0.887 | -- | -- | -- | -- | -0.0928 | -- | -- | -- | -- | -- |
| 522.99 | 1.07 | 4.08 | -- | 0.606 | -- | -- | -- | 0.0186 | 17.2 | -- | -- | -- | -- |
| 518.96 | 1.06 | 4.03 | -- | -- | 0.842 | -- | -- | 0.162 | -- | 32.05 | 4283 | -- | -- |
| 542.23 | 1.09 | 4.07 | -- | -- | -- | -- | -- | 0.00563 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 450.56 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 3 |
| 2 | 450.68 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 3 | 450.76 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 11 | 23 |
| 4 | 450.84 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 7 | 451.11 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 5 |
| 8 | 451.15 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 9 |
| 13 | 451.75 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 31 | 452.32 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 6 |
| 34 | 452.41 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 9 |
| 42 | 452.71 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 9 |
| 78 | 452.85 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 79 | 452.87 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 99 | 453.24 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 6 |
| 100 | 453.25 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 117 | 453.31 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 2 |
| 130 | 453.46 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 144 | 453.57 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 4 |
| 161 | 453.59 | temperature | 30 | 4320 | < th | dose independent | rect. | 6 | 7 |
| 165 | 453.62 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 13 |
| 167 | 453.63 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 11 |
| 178 | 453.67 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 17 |
| 188 | 453.72 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 2 |
| 189 | 453.73 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 6 |
| 197 | 453.78 | temperature | 30 | 4320 | > th | dose dependent | sin | 8 | NA |
| 248 | 454.07 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 249 | 454.07 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 384 | 454.81 | temperature | 30 | 4320 | > th | dose independent | sin | 8 | NA |
| 406 | 454.90 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 447 | 455.15 | temperature | 30 | 4320 | < th | dose independent | sin | 9 | NA |
| 543 | 455.75 | temperature | 25 | 4320 | < th | dose independent | sin | 11 | NA |
| 592 | 455.92 | temperature | 10 | 4320 | > th | dose dependent | sin | 13 | NA |
| 604 | 455.95 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 639 | 456.02 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 649 | 456.04 | temperature | 30 | 4320 | < th | dose dependent | sin | 12 | NA |
| 841 | 456.37 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 955 | 456.60 | temperature | 25 | 4320 | > th | dose independent | sin | 11 | NA |