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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0256000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.82 (0.0494) R2 : 0.602
β1 : 2.32 (0.319) R2dD : 0.324 R2D : -0.383
β2 : 1.93 (0.0855) R2dC : 0.457 R2C : 0.436
β3 : -1.57 (0.146) R2dE : 0.256 R2E : 0.0325
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.5 (1.07) R2dD*E : 0.308 R2D*E : -0.351
γ1 : 0.448 (0.101) R2dN8 : 0.0461 R2N8 : -0.0785
σ : 0.628
deviance : 181.95
__
_____
C
peak time of C : 15.6
E
wheather : temperature
threshold : 25.49
memory length : 1378
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
168.62 0.61 9.83 2.25 1.95 -1.53 -2.15 6.95 0.417 15.4 25.66 1414 -- --
186.7 0.636 9.94 1.55 1.92 -1.58 -2.29 -- 0.521 15.3 11.94 24226 -- --
181.95 0.628 9.82 2.32 1.93 -1.57 -- 7.5 0.448 15.6 25.49 1378 -- --
200.52 0.66 9.97 1.28 1.92 -1.57 -- -- 0.44 15.6 13.47 21301 -- --
366.41 0.892 9.81 2.26 -- -2.04 -- 7.11 0.581 -- 23.69 1195 -- --
215.01 0.687 10.1 0.0419 2.01 -- -2.17 -- -0.113 15.3 -- -- -- --
229.22 0.709 10.1 0.000316 2.01 -- -- -- -0.125 15.5 -- -- -- --
408.28 0.941 9.99 0.71 -- -1.3 -- -- 0.28 -- 18.4 8366 -- --
202.84 0.663 10 -- 1.97 -0.785 -- -- 0.103 15.6 22.1 7479 -- --
455.17 0.997 10.1 -0.0843 -- -- -- -- -0.178 -- -- -- -- --
229.22 0.708 10.1 -- 2.01 -- -- -- -0.125 15.5 -- -- -- --
404.15 0.936 10 -- -- -1.34 -- -- 0.0652 -- 17 2619 -- --
455.36 0.996 10.1 -- -- -- -- -- -0.169 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 158.82 temperature 30 720 < th dose dependent rect. 5 2
2 159.54 humidity 90 43200 > th dose independent rect. 22 1
4 160.42 temperature 30 720 < th dose dependent rect. 4 4
6 160.61 humidity 90 43200 > th dose dependent rect. 22 1
13 161.32 humidity 90 43200 > th dose independent rect. 20 20
34 161.69 humidity 90 43200 > th dose dependent rect. 19 6
38 161.71 humidity 90 43200 > th dose dependent rect. 21 19
61 161.83 humidity 90 43200 > th dose dependent rect. 11 21
66 161.84 humidity 90 43200 > th dose independent rect. 9 23
96 161.94 humidity 90 43200 > th dose independent rect. 7 23
101 161.95 humidity 90 43200 > th dose independent rect. 13 23
113 161.99 humidity 90 43200 > th dose dependent no NA NA
130 162.04 humidity 90 43200 > th dose independent no NA NA
139 162.06 humidity 90 43200 > th dose independent rect. 9 19
149 162.08 humidity 90 43200 > th dose dependent rect. 5 23
175 162.14 humidity 90 43200 > th dose dependent rect. 3 23
213 162.28 humidity 90 43200 < th dose independent rect. 18 21
238 162.33 humidity 90 43200 > th dose dependent sin 5 NA
241 162.34 humidity 90 43200 > th dose independent rect. 1 23
242 162.34 temperature 25 1440 > th dose dependent rect. 16 2
246 162.35 humidity 90 43200 > th dose dependent rect. 11 16
248 162.36 humidity 90 43200 > th dose dependent sin 16 NA
249 162.36 humidity 80 43200 > th dose dependent sin 3 NA
279 162.45 humidity 80 43200 > th dose dependent rect. 3 12
280 162.45 humidity 90 43200 > th dose dependent rect. 13 13
301 162.51 humidity 80 43200 > th dose dependent rect. 2 14
306 162.53 humidity 90 43200 > th dose independent sin 16 NA
308 162.53 humidity 90 43200 < th dose independent rect. 9 23
316 162.57 humidity 90 43200 > th dose independent sin 6 NA
317 162.57 humidity 90 43200 < th dose independent rect. 7 23
323 162.59 humidity 90 43200 > th dose independent rect. 12 14
339 162.63 humidity 90 43200 < th dose independent rect. 13 23
348 162.66 humidity 90 43200 < th dose independent no NA NA
382 162.75 humidity 90 43200 > th dose independent rect. 14 11
394 162.78 humidity 90 43200 < th dose independent rect. 9 19
424 162.84 humidity 90 43200 < th dose independent rect. 24 23
426 162.85 humidity 90 43200 < th dose independent rect. 21 2
431 162.86 temperature 20 720 < th dose independent rect. 4 3
440 162.88 humidity 90 43200 < th dose independent rect. 2 23
445 162.90 humidity 90 43200 < th dose independent rect. 10 17
530 163.24 humidity 90 43200 > th dose dependent rect. 3 6
546 163.32 temperature 25 720 < th dose independent rect. 5 6
558 163.35 humidity 90 43200 < th dose independent sin 16 NA
618 163.54 humidity 90 43200 < th dose independent sin 5 NA
619 163.54 humidity 90 43200 < th dose independent rect. 12 14
675 163.78 humidity 90 43200 < th dose independent rect. 17 8
745 164.11 humidity 80 43200 < th dose independent rect. 13 1
784 164.29 temperature 20 1440 > th dose dependent rect. 20 2
793 164.33 temperature 10 270 > th dose dependent rect. 1 9
796 164.37 humidity 80 43200 > th dose independent rect. 13 1
811 164.43 humidity 70 720 > th dose independent rect. 17 6
891 164.90 temperature 30 720 < th dose dependent rect. 20 14
930 165.09 temperature 30 720 < th dose dependent rect. 20 17
938 165.12 temperature 30 720 < th dose dependent sin 7 NA